New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1266340 =	44 (0.830)	3 (0.060)	3/244	NT	6.2%	coding (1648/2442 nt)	quiP	acyl‑homoserine lactone acylase QuiP
	?	NC_002947	1266412 =	49 (0.970)					coding (1576/2442 nt)	quiP	acyl‑homoserine lactone acylase QuiP

GCCGACACCGGGCTCAGGCGGCCATCGAAGGCCTTGAGCCGGGCCAGCGTGTCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGTGCCAGTCGTTCGGCACGCTCGGGGTAGTACCAGGTGCTGGACAGCTGCATGCCATAGCCGCGCGGCAG  >  NC_002947/1266192‑1266484                                                                                                                                                      |                                                                                                                                                 gCCGACACCGGGCTCAGGCGGCCATCGAAGGCCTTGAGCCGGGCCAGCGTGTCGCGGGCCTTGTCGCGCTGCCCGGGGGGGAGGGGGAGGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCttgtt                                                                                                                                                  <  1:274960/149‑1 (MQ=255)  tatgccgacccgatgctgcacccgtacgaccaggacccacccgcgggctggatcggccatgccaaccagcgcagcctgccgcgcggctatggcatgcagctgtccagcacctggtactaccccgagcgtgccgaacgactggcacagct                                                                                                                                                  <  5:323589‑M1/1‑1 (MQ=255)    tgccgacccgatgctgcacccgtacgaccaggacccacccgcgggctggatcggccatgccaaccagcgcagcctgccgcgcggctatggcatgcagctgtccagcacctggtactaccccgagcgtgccgaacgactggcacagcTg                                                                                                                                                 >  5:319477‑M1/147‑148 (MQ=255)     gccgacccgatgctgcacccgtacgaccaggacccacccgcgggctggatcggccatgccaaccagcgcagcctgccgcgcggctatggcatgcagctgtccagcacctggtactaccccgagcgtgccgaacgactggcacagcTGGc                                                                                                                                               <  6:347456‑M1/4‑1 (MQ=255)      cacCGGGCTCAGGCGGCCATCGAAGGCCTTGAGCCGGGCCAGCGTGTCGCGGGCCTTGTCGCGCTGCCCGGCGGGTAGGGCGTCGATTGCCTGCTTCAGTGGCTGTG‑CCATGCCGGGTGCTTCGAACATCTGCTTGAGCTTGTTGGCCa                                                                                                                                             <  2:47218/149‑1 (MQ=255)      cacCGGGCTCAGGCGGCCATCGAAGGCCTTGAGCCGGGCCAGCGTGTCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGc                                                                                                                                               >  7:290051/1‑147 (MQ=255)      cacCGGGCTCAGGCGGCCATCGAAGGCCTTGAGCCGGGCCAGCGTGTCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCa                                                                                                                                             <  3:3770/149‑1 (MQ=255)       acCGGGCTCAGGCGGCCATCGAAGGCCTTGAGCCGGGCCAGCGTGTCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAg                                                                                                                                            >  2:347833/1‑149 (MQ=255)         cGGGCTCAGGCGGCCATCGAAGGCCTTGAGCCGGGCCAGCGTGTCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGc                                                                                                                                           >  4:149239/1‑148 (MQ=255)          gggCGCAGGCGGCCATCGAAGGCCTTGAGCCGGGCCAGCGTGTCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCaa                                                                                                                                         <  7:256644/149‑1 (MQ=255)            gCTCAGGCGGCCATCGAAGGCCTTGAGCCGGGCCAGCGTGTCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGGCCCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAg                                                                                                                                        <  1:252972/149‑1 (MQ=255)            gCTCAGGCGGCCATCGAAGGCCTTGAGCCGGGCCAGCGTGTCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAgg                                                                                                                                       <  4:179874/149‑1 (MQ=255)             cTCAGGCGGCCATCGAAGGCCTTGAGCCGGGCCAGCGTGTCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGt                                                                                                                                      <  8:162763/149‑1 (MQ=255)                         tCGAAGGCCTTGAGCCGGGCCAGCGTGTCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGtt                                                                                                                          >  4:8680/1‑149 (MQ=255)                              ggCCTTGAGCCGGGCCAGCGTGTCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGt                                                                                                                              <  8:298944/140‑1 (MQ=255)                              ggCCTTGAGCCGGGCCAGCGTGTCGCGGGCCTTGTCGCGCTGCCAGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGt                                                                                                                              >  7:298944/1‑140 (MQ=255)                                  ttGAGCCGGGCCAGCGTGTCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGc                                                                                                                 >  5:33533/1‑149 (MQ=255)                                          ggCCAGCGTGTCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGc                                                                                                         >  7:8051/1‑149 (MQ=255)                                             cAGCGTGTCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGc                                                                                                      <  3:149239/149‑1 (MQ=255)                                               gCGTGTCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGa                                                                                                    >  3:33169/1‑149 (MQ=255)                                                cGTGTCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCttgttg                                                                                                                                                 >  6:63030/1‑103 (MQ=255)                                                cGTGTCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCttgttg                                                                                                                                                 <  5:63030/103‑1 (MQ=255)                                                  tgtCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTg                                                                                                 <  6:33533/149‑1 (MQ=255)                                                    tCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTc                                                                                               <  8:290051/149‑1 (MQ=255)                                                     cgcgGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCg                                                                                              <  3:8680/149‑1 (MQ=255)                                                      gcgGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGt                                                                                             <  4:33169/149‑1 (MQ=255)                                                       cgGGCCTTGTAGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTTGCCAGCAAGGTCACCTGGTCGTTCTGCATGGCCATCAGTCTGCGACTGTCTTg                                                                                            <  8:100815/149‑1 (MQ=255)                                                                        gcagcctgccgcgcggctatggcatgcagctgtccagcacctggtactaccccgagcgtgccgaacgactggcacagcTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGcc                                                                            >  6:82766‑M1/79‑149 (MQ=255)                                                                        cccGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGc                                                                             <  1:347833/147‑1 (MQ=255)                                                                        cccGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGc                                                                             >  8:23958/1‑147 (MQ=255)                                                                          cggcggGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCAcc                                                                                                                                  >  6:352237/1‑92 (MQ=255)                                                                              ggggAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTg                                                                                                       >  7:83333/1‑115 (MQ=255)                                                                              ggggAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTg                                                                                                       <  8:83333/115‑1 (MQ=255)                                                                                       gTCGATTGCCTGCGTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGTGCCAGTCGtt                                                            >  5:290359/1‑149 (MQ=255)                                                                                        tCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGTGCCAGTCGTTc                                                           >  7:218206/1‑149 (MQ=255)                                                                                                   cTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGTGCCAGTCGTTCGGCACGCTCgg                                                <  8:218206/149‑1 (MQ=255)                                                                                                     cgaatctcTGGG‑CCATGCCGGGTGCGGCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGTGCCAGTCGTTCGGCACGCTCgggg                                              <  5:209967/142‑1 (MQ=255)                                                                                                      cAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGTGCCAGTCGTTCGGCACGCTCgggg                                              <  7:23958/148‑1 (MQ=255)                                                                                                      cAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGTGCCAGTCGTTCGGCACGCTCggg                                               <  1:275753/147‑1 (MQ=255)                                                                                                       aGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGTGCCAGTCGTTCGGCACGCTCGGGgt                                             <  8:8051/148‑1 (MQ=255)                                                                                                        gTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGTGCCAGTCGTTCGGCACGCTCGGGgtag                                           >  2:112367/1‑149 (MQ=255)                                                                                                        gTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTACGACTGTCGTGGCGACCGTTGCCGGGCAGCTGTGCCAGTCGTTCGGCACGCTCGGGgtag                                           >  6:227669/1‑149 (MQ=255)                                                                                                         tGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCAGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGTGCCAGTCGTTCGGCACGCTCGGGgtag                                           >  1:117252/1‑148 (MQ=255)                                                                                                             tGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGTGCCAGTCGTTCGGCACGCTCgggg                                              >  6:209967/1‑141 (MQ=255)                                                                                                               gg‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGTCAGCTGTGCCAGTCGTTCGGCACGCTCggg                                               >  2:28292/1‑138 (MQ=255)                                                                                                               gg‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGACAGCTGTGCCAGTCGTTCGGCACGCTCggg                                               <  1:28292/138‑1 (MQ=255)                                                                                                               cctggtactaccccgagcgtgccgaacgactggcacagcTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCa                                                                           >  3:33921‑M1/40‑111 (MQ=255)                                                                                                               cctggtactaccccgagcgtgccgaacgactggcacagcTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCa                                                                           <  4:33921‑M1/72‑1 (MQ=255)                                                                                                                     tGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGTGCCAGTCGTTCGGCACGCTCGGGGTAGTACCAg                                     <  2:20770/143‑1 (MQ=255)                                                                                                                     tGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGTGCCAGTCGTTCGGCACGCTCGGGGTAGTACCAg                                     >  1:20770/1‑143 (MQ=255)                                                                                                                     tGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGTGCCAGTCGTTCGGCACGCTCGGGGTAGTACCAGGTGCTg                               <  6:290359/149‑1 (MQ=255)                                                                                                                                       tCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGTGCCAGTCGTTCGGCACGCTCGGGGTAGTACCAGGTGCTGGACAGCt                        >  7:267790/1‑138 (MQ=255)                                                                                                                                       tCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGTGCCAGTCGTTCGGCACGCTCGGGGTAGTACCAGGTGCTGGACAGCt                        <  8:267790/138‑1 (MQ=255)                                                                                                                                               aGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTACGACTGTCGTGGCGACCGTTGCCGGGCAGCTGTGCCAGTCGTTCGGCACGCTCGGGGTAGTACCAGGTGCTGGACAGCTGCATGCCATAGCcgcgcg      <  5:227669/148‑1 (MQ=255)                                                                                                                                                  ttgttgGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGTGCCAGTCGTTCGGCACGCTCGGGGTAGTACCAGGTGCTGGACAGCTGCATGCCATAGCCGCGCGGCAg  >  4:319167/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                 GCCGACACCGGGCTCAGGCGGCCATCGAAGGCCTTGAGCCGGGCCAGCGTGTCGCGGGCCTTGTCGCGCTGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGG‑CCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGTGCCAGTCGTTCGGCACGCTCGGGGTAGTACCAGGTGCTGGACAGCTGCATGCCATAGCCGCGCGGCAG  >  NC_002947/1266192‑1266484

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.