New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1468458	34 (0.640)	6 (0.120)	4/242	NT	14.2%	coding (234/1479 nt)	algE	alginate production protein AlgE
	?	NC_002947	= 1468480	40 (0.800)					coding (212/1479 nt)	algE	alginate production protein AlgE

TAGCCGACCCAGAACTCGCGCATGGCCAGGTAGCTTTTGTCTGGTTGACGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAGGCCGAAGTTTTTT  >  NC_002947/1468312‑1468602                                                                                                                                                   |                                                                                                                                                 tAGCCGACCCAGAACTCGCGCATGGCCAGGTAGCTTTTGTCTGGTTGACGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTa                                                                                                                                                <  3:40608/149‑1 (MQ=255)                  gcgcATGGCCAGGTAGCTTTTGTCTGGTTGACGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACcgc                                                                                                                               >  5:347357/1‑149 (MQ=255)                           cAGGTAGCTTTTGTCTGGTTGACGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTcgccat                                                                                                                      >  7:324518‑M2/1‑143 (MQ=255)                                   ttttGTCTGGTTGACGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGagcgcggtaactggagtgcctacgccatgg                                                                                                                    >  8:55799‑M1/1‑113 (MQ=255)                                   ttttGTCTGGTTGACGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGagcgcggtaactggagtgcctacgccatgg                                                                                                                    <  7:55799‑M1/143‑31 (MQ=255)                                   ttttGTCTGGTTGACGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCAc                                                                                                              >  1:86071/1‑149 (MQ=255)                                       gTCTGGTTGACGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGgc                                                                                                          >  8:213457/1‑149 (MQ=255)                                         cTGGTTGACGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGgcgc                                                                                                        <  6:347357/149‑1 (MQ=255)                                                aCGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGagcgcggtaactggagtgcctacgccatg                                                                                                                     >  1:156413‑M1/1‑100 (MQ=255)                                                aCGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGagcgcggtaactggagtgcctacgccatg                                                                                                                     <  2:161672‑M1/129‑30 (MQ=255)                                                aCGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGagcgcggtaactggagtgcctacgccatg                                                                                                                     <  2:156413‑M1/129‑30 (MQ=255)                                                aCGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGagcgcggtaactggagtgcctacgccatg                                                                                                                     >  1:161672‑M1/1‑100 (MQ=255)                                                 cGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGATCTGGCGCAAGCTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATccag                                                                                                >  2:69896/1‑149 (MQ=255)                                                  ggCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATccagg                                                                                               >  4:72313/1‑149 (MQ=255)                                                             ccGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGtt                                                                                    <  2:86071/149‑1 (MQ=255)                                                               ggTGTCGGTGCTGGTGCCGTCGTCTTTCTGGCGCAAGGTGTCTGTTTCGATGGTGTCGGTCTCAGCGACCGCCTGGCCCATGGCGTAGGCTCTCCAGTTACCGCGCTCGCCATACACCCACGGGAGCAGATCCAGGCCCAGGCCGTTGa                                                                                  <  5:161825/149‑1 (MQ=255)                                                               ggTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGa                                                                                  >  3:159790/1‑149 (MQ=255)                                                                   tCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTc                                                                              <  3:72313/149‑1 (MQ=255)                                                                           ggTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTcgccgc                                                                         >  4:323861/1‑146 (MQ=255)                                                                            gTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCa                                                                       <  7:213457/147‑1 (MQ=255)                                                                             tGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCagag                                                                    >  7:258675/1‑149 (MQ=255)                                                                               ccGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTcgccgc                                                                         >  3:3349/1‑142 (MQ=255)                                                                               ccGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTcgccgc                                                                         <  4:3349/142‑1 (MQ=255)                                                                                cgtcgtcgtTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCgg                                                                 <  1:70967/149‑1 (MQ=255)                                                                                               gcAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCTTACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGATGTCACgg                                                  <  1:69896/149‑1 (MQ=255)                                                                                               gcAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATccagg                                                                                               >  3:187915/1‑104 (MQ=255)                                                                                               gcAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATccagg                                                                                               <  4:187915/104‑1 (MQ=255)                                                                                                 aaGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGgtc                                                >  2:312249/1‑149 (MQ=255)                                                                                                              cGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTg                                    <  3:323861/148‑1 (MQ=255)                                                                                                               gATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGc                                  >  1:145430/1‑149 (MQ=255)                                                                                                                aTGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGcc                                 <  1:312249/149‑1 (MQ=255)                                                                                                                 tGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCg                                >  2:72459/1‑149 (MQ=255)                                                                                                                     gtcggtcgCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGa                            >  7:297049/1‑149 (MQ=255)                                                                                                                      gcggtcgCTGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCCTACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGAt                           >  5:224812/2‑149 (MQ=255)                                                                                                                         gtcgCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAg                                                         <  3:155683/116‑1 (MQ=255)                                                                                                                         gtcgCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAg                                                         >  4:155683/1‑116 (MQ=255)                                                                                                                         gtcgCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGAtttt                        <  8:297049/149‑1 (MQ=255)                                                                                                                                            ccATGGCGTAGGCACTCCAGTTACCGCGCTcgccatgggccaggcggtcgctgcgaccgacaccatcgaaaccgacaccttgcgccagaacgacgacggcaccagcaccgacaccggcgacgacagccgtcaaccagacaaaa           >  8:55799‑M2/1‑30 (MQ=255)                                                                                                                                            ccATGGCGTAGGCACTCCAGTTACCGCGCTcgccatgggccaggcggtcgctgcgaccgacaccatcgaaaccgacaccttgcgccagaacgacgacggcaccagcaccgacaccggcgacgacagccgtcaaccagacaaaa           <  7:55799‑M2/143‑114 (MQ=255)                                                                                                                                             cATGGCGTAGGCACTCCAGTTACCGCGCTcgccatgggccaggcggtcgctgcgaccgacaccatcgaaaccgacaccttgcgccagaacgacgacggcaccagcaccgacaccggcgacgacagccgt                        >  1:161672‑M2/1‑29 (MQ=255)                                                                                                                                             cATGGCGTAGGCACTCCAGTTACCGCGCTcgccatgggccaggcggtcgctgcgaccgacaccatcgaaaccgacaccttgcgccagaacgacgacggcaccagcaccgacaccggcgacgacagccgt                        >  1:156413‑M2/1‑29 (MQ=255)                                                                                                                                             cATGGCGTAGGCACTCCAGTTACCGCGCTcgccatgggccaggcggtcgctgcgaccgacaccatcgaaaccgacaccttgcgccagaacgacgacggcaccagcaccgacaccggcgacgacagccgt                        <  2:161672‑M2/129‑101 (MQ=255)                                                                                                                                             cATGGCGTAGGCACTCCAGTTACCGCGCTcgccatgggccaggcggtcgctgcgaccgacaccatcgaaaccgacaccttgcgccagaacgacgacggcaccagcaccgacaccggcgacgacagccgt                        <  2:156413‑M2/129‑101 (MQ=255)                                                                                                                                             cATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTcc                 >  1:325859/1‑136 (MQ=255)                                                                                                                                             cATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTcc                 <  2:325859/136‑1 (MQ=255)                                                                                                                                             cATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAg               >  6:181864/1‑138 (MQ=255)                                                                                                                                             cATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAg               <  5:181864/138‑1 (MQ=255)                                                                                                                                             cATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAGGCCGAAGtttt    >  4:300150/1‑149 (MQ=255)                                                                                                                                              aTGGCGagcgcggtaactggagtgcctacgccatgggccaggcggtcgctgcgaccgacaccatcgaaaccgacaccttgcgccagaacgacgacggcaccagcaccgacaccggcgacgacagccgtcaaccagacaaaagctacctg   >  7:324518‑M1/1‑6 (MQ=255)                                                                                                                                               tGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAGGCCGAAGtttttt  <  8:258675/149‑1 (MQ=255)                                                                                                                                                   gTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGACCGGTGATTTTCACGTCCAGGCCGAAGttttt   <  1:236449/144‑1 (MQ=255)                                                                                                                                                   gTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGACCGGTGATTTTCACGTCCAGGCCGAAGttttt   >  2:236449/1‑144 (MQ=255)                                                                                                                                                   |                                                                                                                                                 TAGCCGACCCAGAACTCGCGCATGGCCAGGTAGCTTTTGTCTGGTTGACGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAGGCCGAAGTTTTTT  >  NC_002947/1468312‑1468602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.