New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1468458	34 (0.640)	6 (0.120)	4/242	NT	14.2%	coding (234/1479 nt)	algE	alginate production protein AlgE
	?	NC_002947	= 1468480	40 (0.800)					coding (212/1479 nt)	algE	alginate production protein AlgE

CAGGTAGCTTTTGTCTGGTTGACGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAGGCCGAAGTTTTTTTCAGCGGTCATTTCCGCCAGGGTCGG  >  NC_002947/1468338‑1468628                                                                                                                                               |                                                                                                                                                     cAGGTAGCTTTTGTCTGGTTGACGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTcgccat                                                                                                                                                >  7:324518‑M2/1‑143 (MQ=255)         ttttGTCTGGTTGACGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCAc                                                                                                                                        >  1:86071/1‑149 (MQ=255)             gTCTGGTTGACGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGgc                                                                                                                                    >  8:213457/1‑149 (MQ=255)               cTGGTTGACGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGgcgc                                                                                                                                  <  6:347357/149‑1 (MQ=255)                       cGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGATCTGGCGCAAGCTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATccag                                                                                                                          >  2:69896/1‑149 (MQ=255)                        ggCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATccagg                                                                                                                         >  4:72313/1‑149 (MQ=255)                                   ccGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGtt                                                                                                              <  2:86071/149‑1 (MQ=255)                                     ggTGTCGGTGCTGGTGCCGTCGTCTTTCTGGCGCAAGGTGTCTGTTTCGATGGTGTCGGTCTCAGCGACCGCCTGGCCCATGGCGTAGGCTCTCCAGTTACCGCGCTCGCCATACACCCACGGGAGCAGATCCAGGCCCAGGCCGTTGa                                                                                                            <  5:161825/149‑1 (MQ=255)                                     ggTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGa                                                                                                            >  3:159790/1‑149 (MQ=255)                                         tCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTc                                                                                                        <  3:72313/149‑1 (MQ=255)                                                 ggTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTcgccgc                                                                                                   >  4:323861/1‑146 (MQ=255)                                                  gTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCa                                                                                                 <  7:213457/147‑1 (MQ=255)                                                   tGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCagag                                                                                              >  7:258675/1‑149 (MQ=255)                                                     ccGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTcgccgc                                                                                                   <  4:3349/142‑1 (MQ=255)                                                     ccGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTcgccgc                                                                                                   >  3:3349/1‑142 (MQ=255)                                                      cgtcgtcgtTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCgg                                                                                           <  1:70967/149‑1 (MQ=255)                                                                     gcAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCTTACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGATGTCACgg                                                                            <  1:69896/149‑1 (MQ=255)                                                                     gcAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATccagg                                                                                                                         <  4:187915/104‑1 (MQ=255)                                                                     gcAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATccagg                                                                                                                         >  3:187915/1‑104 (MQ=255)                                                                       aaGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGgtc                                                                          >  2:312249/1‑149 (MQ=255)                                                                                    cGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTg                                                              <  3:323861/148‑1 (MQ=255)                                                                                     gATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGc                                                            >  1:145430/1‑149 (MQ=255)                                                                                      aTGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGcc                                                           <  1:312249/149‑1 (MQ=255)                                                                                       tGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCg                                                          >  2:72459/1‑149 (MQ=255)                                                                                           gtcggtcgCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGa                                                      >  7:297049/1‑149 (MQ=255)                                                                                            gcggtcgCTGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCCTACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGAt                                                     >  5:224812/2‑149 (MQ=255)                                                                                               gtcgCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAg                                                                                   <  3:155683/116‑1 (MQ=255)                                                                                               gtcgCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAg                                                                                   >  4:155683/1‑116 (MQ=255)                                                                                               gtcgCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGAtttt                                                  <  8:297049/149‑1 (MQ=255)                                                                                                                  ccATGGCGTAGGCACTCCAGTTACCGCGCTcgccatgggccaggcggtcgctgcgaccgacaccatcgaaaccgacaccttgcgccagaacgacgacggcaccagcaccgacaccggcgacgacagccgtcaaccagacaaaa                                     >  8:55799‑M2/1‑30 (MQ=255)                                                                                                                  ccATGGCGTAGGCACTCCAGTTACCGCGCTcgccatgggccaggcggtcgctgcgaccgacaccatcgaaaccgacaccttgcgccagaacgacgacggcaccagcaccgacaccggcgacgacagccgtcaaccagacaaaa                                     <  7:55799‑M2/143‑114 (MQ=255)                                                                                                                   cATGGCGTAGGCACTCCAGTTACCGCGCTcgccatgggccaggcggtcgctgcgaccgacaccatcgaaaccgacaccttgcgccagaacgacgacggcaccagcaccgacaccggcgacgacagccgt                                                  >  1:156413‑M2/1‑29 (MQ=255)                                                                                                                   cATGGCGTAGGCACTCCAGTTACCGCGCTcgccatgggccaggcggtcgctgcgaccgacaccatcgaaaccgacaccttgcgccagaacgacgacggcaccagcaccgacaccggcgacgacagccgt                                                  >  1:161672‑M2/1‑29 (MQ=255)                                                                                                                   cATGGCGTAGGCACTCCAGTTACCGCGCTcgccatgggccaggcggtcgctgcgaccgacaccatcgaaaccgacaccttgcgccagaacgacgacggcaccagcaccgacaccggcgacgacagccgt                                                  <  2:156413‑M2/129‑101 (MQ=255)                                                                                                                   cATGGCGTAGGCACTCCAGTTACCGCGCTcgccatgggccaggcggtcgctgcgaccgacaccatcgaaaccgacaccttgcgccagaacgacgacggcaccagcaccgacaccggcgacgacagccgt                                                  <  2:161672‑M2/129‑101 (MQ=255)                                                                                                                   cATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTcc                                           >  1:325859/1‑136 (MQ=255)                                                                                                                   cATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTcc                                           <  2:325859/136‑1 (MQ=255)                                                                                                                   cATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAg                                         <  5:181864/138‑1 (MQ=255)                                                                                                                   cATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAg                                         >  6:181864/1‑138 (MQ=255)                                                                                                                   cATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAGGCCGAAGtttt                              >  4:300150/1‑149 (MQ=255)                                                                                                                     tGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAGGCCGAAGtttttt                            <  8:258675/149‑1 (MQ=255)                                                                                                                         gTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGACCGGTGATTTTCACGTCCAGGCCGAAGttttt                             >  2:236449/1‑144 (MQ=255)                                                                                                                         gTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGACCGGTGATTTTCACGTCCAGGCCGAAGttttt                             <  1:236449/144‑1 (MQ=255)                                                                                                                               aCTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAGGCCGAAGTTTTTTTCAGCGGTCa                  >  7:184447/1‑149 (MQ=255)                                                                                                                                    aGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAGGCCGAAGTTTTTTTCAGCGGTCATTTcc             <  2:145430/149‑1 (MQ=255)                                                                                                                                     gTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAGGCCGAAGTTTTTTTCAGCGGTCATTTc              >  6:211094/1‑147 (MQ=255)                                                                                                                                     gTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAGGCCGAAGTTTTTTTCAGCGGTCATTTc              <  5:211094/147‑1 (MQ=255)                                                                                                                                            cgcTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAGGCCGAAGTTTTTTTCAGCGGTCATTTCCGCCAGGGt     <  1:72459/149‑1 (MQ=255)                                                                                                                                               tCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAGGCCGAAGttttt                             >  3:152677/1‑122 (MQ=255)                                                                                                                                               tCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAGGCCGAAGttttt                             <  4:152677/122‑1 (MQ=255)                                                                                                                                               tCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAGGCCGAAGTTTTTTTCAGCGGTCATTTCCGCCAGGGTCgg  >  8:305483/1‑149 (MQ=255)                                                                                                                                               tCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAGGCCGAAGTTTTTTTCAGCGGTCATTTCCGCCAGGGTCgg  >  4:40030/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                     CAGGTAGCTTTTGTCTGGTTGACGGCTGTCGTCGCCGGTGTCGGTGCTGGTGCCGTCGTCGTTCTGGCGCAAGGTGTCGGTTTCGATGGTGTCGGTCGCAGCGACCGCCTGGCCCATGGCGTAGGCACTCCAGTTACCGCGCTCGCCATACACCCACGGGCGCAGATCCAGGCCCAGGCCGTTGACGTCGCCGCCAGAGCGGGTGCCGAGGTCACGGTCGTCTTCCGACTGGCCGGTGATTTTCACGTCCAGGCCGAAGTTTTTTTCAGCGGTCATTTCCGCCAGGGTCGG  >  NC_002947/1468338‑1468628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.