New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1906968 =	50 (0.950)	4 (0.080)	4/238	NT	8.6%	coding (771/951 nt)	PP_1707	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	1907005 =	38 (0.770)					coding (734/951 nt)	PP_1707	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein

ACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCAGGTACCCCTCGCTGCCCAACGCCTGAAGCACGTCGCGATTGATCAGCGCCTCGCCCTTGTCA  >  NC_002947/1906825‑1907112                                                                                                                                                 |                                                                                                                                                 caaggacagcgatgcgctgatcctcgcagcggcggctgacaagggcgaggcgctgatcaatcgcgacgtgcttcaggcgttgggcagcgaggggtacctgatcaacatcgcacgcggcaagctggtagatgagcctgcgttgatcgccg                                                                                                                                              <  7:148512‑M1/5‑1 (MQ=255) caaggacagcgatgcgctgatcctcgcagcggcggctgacaagggcgaggcgctgatcaatcgcgacgtgcttcaggcgttgggcagcgaggggtacctgatcaacatcgcacgcggcaagctggtagatgagcctgcgttgatcgc                                                                                                                                                <  7:209155‑M1/3‑1 (MQ=255)       accaGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCAcc                                                                                                                                       >  4:139249/1‑149 (MQ=255)       accaGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCAc                                                                                                                                        <  8:145922/148‑1 (MQ=255)       accaGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCAc                                                                                                                                        >  7:145922/1‑148 (MQ=255)         caGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGa                                                                                                                                     >  2:306002/1‑149 (MQ=255)          aGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGAt                                                                                                                                    <  1:330846/149‑1 (MQ=255)              tGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCg                                                                                                                                >  7:288830/1‑149 (MQ=255)                   accaccaTCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGc                                                                                                                           >  7:57269/1‑149 (MQ=255)                        caTCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTg                                                                                                                        >  7:317723/1‑147 (MQ=255)                        caTCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTg                                                                                                                        >  4:252552/1‑147 (MQ=255)                        caTCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCa                                                                                                                      <  5:4201/149‑1 (MQ=255)                            tcGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAgcgc                                                                                                                  >  8:302216/1‑149 (MQ=255)                             cGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGc                                                                                                                           >  1:66833/1‑139 (MQ=255)                             cGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGc                                                                                                                           <  2:66833/139‑1 (MQ=255)                              gCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGcgcg                                                                                                                 <  8:317723/148‑1 (MQ=255)                              gCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCgcgg                                                                                                                <  2:152328/149‑1 (MQ=255)                              gCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATATTCGCGCTCGAACAACGCCTAGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAgc                                                                                                                    <  1:64920/145‑1 (MQ=255)                                  aTGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGAt                                                                                                            <  8:57269/149‑1 (MQ=255)                                        gtgcgtgTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGc                                                                                                                       >  2:210736/1‑132 (MQ=255)                                         aagggcgaggcgctgatcaatcgcgacgtgcttcaggcgttgggcagcgaggggtacctgatcaacatcgcacgcggcaagctggtagatgagcctgcgttgatCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGa                                                                                                             <  6:60334‑M1/38‑1 (MQ=255)                                         aagggcgaggcgctgatcaatcgcgacgtgcttcaggcgttgggcagcgaggggtacctgatcaacatcgcacgcggcaagctggtagatgagcctgcgttgatCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGa                                                                                                             >  5:60334‑M1/105‑142 (MQ=255)                                              gtCTGTACAGTGGCACTGGCGCGATGCGGTTTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGc                                                                                                  >  1:30844/1‑148 (MQ=255)                                                 tGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATc                                                                                             >  3:141115/1‑149 (MQ=255)                                                   tACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTa                                                                                           >  5:242116/1‑149 (MQ=255)                                                    aCAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAg                                                                                                    <  4:10491/139‑1 (MQ=255)                                                    aCAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAg                                                                                                    >  3:10491/1‑139 (MQ=255)                                                     ctgatcaatcgcgacgtgcttcaggcgttgggcagcgaggggtacctgatcaacatcgcacgcggcaagctggtagatgagcctgcgttgatCGCCGCGCCACCGATCTCGCCAGCCTGCAGCgcgg                                                                                                                <  1:265110‑M1/35‑1 (MQ=255)                                                     ctgatcaatcgcgacgtgcttcaggcgttgggcagcgaggggtacctgatcaacatcgcacgcggcaagctggtagatgagcctgcgttgatCGCCGCGCCACCGATCTCGCCAGCCTGCAGCgcgg                                                                                                                >  2:265110‑M1/93‑127 (MQ=255)                                                     cAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTAc                                                                                          <  2:30844/148‑1 (MQ=255)                                                             cTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGcc                                                                                 <  7:302216/149‑1 (MQ=255)                                                                 cgcgATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGt                                                                             <  3:252552/149‑1 (MQ=255)                                                                      tGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGAt                                                                        <  6:242116/149‑1 (MQ=255)                                                                         gg‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCATCGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGtt                                                                     <  3:139249/149‑1 (MQ=255)                                                                               cAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCa                                                                <  8:288830/149‑1 (MQ=255)                                                                                     tACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGc                                                                                      <  5:313017/121‑1 (MQ=255)                                                                                     tACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGc                                                                                      >  6:313017/1‑121 (MQ=255)                                                                                      aCATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCAGGTAccc                                                         >  3:14631/1‑149 (MQ=255)                                                                                        aTCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCAGGTACCCCt                                                       >  3:184994/1‑149 (MQ=255)                                                                                          cTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAgg                                                                                                   <  7:173177/103‑1 (MQ=255)                                                                                          cTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAgg                                                                                                   >  8:173177/1‑103 (MQ=255)                                                                                          cTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGt                                                                      >  6:338632/1‑132 (MQ=255)                                                                                               cgcTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCAGGTACCCCTCGCTGcc                                                <  4:14631/149‑1 (MQ=255)                                                                                               cgcTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCAGGTACCCCTCGCTGcc                                                <  4:141115/149‑1 (MQ=255)                                                                                                        aacGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCAGGTACCCCTCGCTGCCCAACGCCt                                        >  3:122345/1‑148 (MQ=255)                                                                                                         acGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCAGGTACCCCTCGCTGCCCAACGCCTg                                       >  8:285100/1‑148 (MQ=255)                                                                                                             cTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCAGGTACCCCTCGCTGCCCAACGCCTGAAGCa                                  >  7:78226/1‑149 (MQ=255)                                                                                                                      tCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCAGGTACCCCTCGCTGccc                                               >  3:132688/1‑127 (MQ=255)                                                                                                                      tCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCAGGTACCCCTCGCTGccc                                               <  4:132688/127‑1 (MQ=255)                                                                                                                        gcgGTTCATCTGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCAGGTACCCCTCGCTGCCCAACGCCTGAAGCACGTCGCGAt                         <  1:306002/147‑1 (MQ=255)                                                                                                                        gcgGTTCATCTGAAAACTCATGCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCTCGGCGATCATCGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCAGGTACCCCTCGCTGCCGAACGCCTGAAGGAATTCGCGATTg                       <  8:78226/149‑1 (MQ=255)                                                                                                                        gcgGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCAGGTACCCCTCGCTGCCCAACGCCTGAAGCACGTCGCGAtt                        <  7:285100/148‑1 (MQ=255)                                                                                                                                   gCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCAGGTACCCCTCGCTGCCCAACGCCTGAAGCACGTCGCGATTGATCAGCGCCTc            >  8:148512/1‑149 (MQ=255)                                                                                                                                     aaaCACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCAGGt                                                             <  8:259586/98‑1 (MQ=255)                                                                                                                                     aaaCACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCAGGt                                                             >  7:259586/1‑98 (MQ=255)                                                                                                                                           aTCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTCCCAGCTTGCCGCGTGCGATGTTGATCAGGTACCCCTCGCTGCCCCACGCCTGAAGCACGTCGCGATTGATCAGCGCCTCGCCGTTGt    >  2:212112/1‑149 (MQ=255)                                                                                                                                            tCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGAt                                                                        >  4:65982/1‑80 (MQ=255)                                                                                                                                            tCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGAt                                                                        <  3:65982/80‑1 (MQ=255)                                                                                                                                            tCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCAGGTACCCCTCGCTGCCCAACGCCTGAAGCACGTCGCGATTGATCAGCGCCTCGCCCTTGTc   <  4:184994/149‑1 (MQ=255)                                                                                                                                              cAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCAGGTACCCCTCGCTGCCCAACGCCTGAAGCACGTCGCGATTGATCAGCGCCTCGCCCTTGTCa  <  4:122345/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                 ACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG‑TTGCAGGACTACATCTTCGCGCTCGAACAACGCCTCGGGCGCTCGCGGTTCATCGGCAAACACATCCAGCGCCGCGCCACCGATCTCGCCAGCCTGCAGCGCGGCGATCAACGCAGGCTCATCTACCAGCTTGCCGCGTGCGATGTTGATCAGGTACCCCTCGCTGCCCAACGCCTGAAGCACGTCGCGATTGATCAGCGCCTCGCCCTTGTCA  >  NC_002947/1906825‑1907112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.