New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2052922	47 (0.890)	4 (0.080)	4/248	NT	7.6%	coding (679/783 nt)	PP_1828	hypothetical protein
	?	NC_002947	= 2052948	51 (0.990)					coding (653/783 nt)	PP_1828	hypothetical protein

GCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAATCTCCACCCGCTGCAGGCGCTCGCTGCTCCAGGCGGCCTTGAGCTGGCCCACC  >  NC_002947/2052782‑2053061                                                                                                                                             |                                                                                                                                            gcgAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCt                                                                                                                                     >  4:343136/1‑149 (MQ=255)         gCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGc                                                                                                                             <  5:54375/149‑1 (MQ=255)          cccTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCaactgcgcgagcgggat                                                                                                                            >  1:251002‑M1/1‑132 (MQ=255)            cTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTcg                                                                                                                          >  3:179741/1‑149 (MQ=255)              aaTTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCGGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGAAGTAGGCTACGCGCGCATCCCGCAcgcg                                                                                                                        >  3:185457/1‑149 (MQ=255)                       cGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGccc                                                                                                               <  3:252287/149‑1 (MQ=255)                            gATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCccttcct                                                                                                          >  8:170485/1‑149 (MQ=255)                             aTGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCaactgcgcgagcgggatgagcgcgtagccaaatac                                                                                                          <  2:251002‑M1/148‑36 (MQ=255)                             aTGCGGGCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGATATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCccttcc                                                                                                           <  6:322539/147‑1 (MQ=255)                              tGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCttt                                                                                                        <  3:343136/149‑1 (MQ=255)                                  ggcTTAGCGGGTAGCAATCCAGATCAAGAGCACTGCCTGGAACACGGCAAACTCCACCAGGCATGTAATGTTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGTCTACGCGATCATCCCGCTCGCGCAGTTGCCCTTCCTTTTACt                                                                                                    <  3:10281/147‑1 (MQ=255)                                  gTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCt                                                                                                    <  4:179741/149‑1 (MQ=255)                                        gCGGGTAGCAATCGCGATCTCCCGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACTCAATCCGCCGTCTTCTCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGtt                                                                                              <  4:185457/149‑1 (MQ=255)                                               gCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTCCTGGt                                                                                        <  7:319751/148‑1 (MQ=255)                                                 aaTCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCg                                                                                      <  7:170485/148‑1 (MQ=255)                                                   tCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGcc                                                                                   <  5:83315/149‑1 (MQ=255)                                                     cAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCctg                                                                                 >  2:153326/1‑149 (MQ=255)                                                      aGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCaactgcgcgagcgggatgagcgcgtagccaaa                                                                                                             <  2:74133‑M1/120‑33 (MQ=255)                                                      aGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCaactgcgcgagcgggatgagcgcgtagccaaa                                                                                                             >  1:74133‑M1/1‑88 (MQ=255)                                                            aCAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTgcagc                                                                          >  3:333990/1‑149 (MQ=255)                                                            aCAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTgcag                                                                           >  6:59355/1‑148 (MQ=255)                                                            aCAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTgcag                                                                           >  8:262447/1‑148 (MQ=255)                                                            aCAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTgcag                                                                           >  5:113174/1‑148 (MQ=255)                                                                 cctgcctgGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTc                                                                                                      <  4:129702/116‑1 (MQ=255)                                                                     cctgGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTggc                                                                  <  4:333990/148‑1 (MQ=255)                                                                          aaCACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATc                                                            >  6:148202/1‑149 (MQ=255)                                                                               ggCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCTCGCAGTTGCCCTTACTTTTCCTGCAGtt                                                                                              <  5:24223/110‑1 (MQ=255)                                                                               ggCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGtt                                                                                              >  6:24223/1‑110 (MQ=255)                                                                                 cAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCccttc                                                                                                            >  8:132994/1‑94 (MQ=255)                                                                                 cAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCccttc                                                                                                            <  7:132994/94‑1 (MQ=255)                                                                                   aaCGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAAtctc                                                   <  1:153326/149‑1 (MQ=255)                                                                                    aCGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAgg                                                                       >  5:78350/1‑128 (MQ=255)                                                                                    aCGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAgg                                                                       <  6:78350/128‑1 (MQ=255)                                                                                      gCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAATCTCCAc                                                >  4:251713/1‑149 (MQ=255)                                                                                        caccaGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAATCTCCAccc                                              >  1:39304/1‑149 (MQ=255)                                                                                                  gTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAATCTCCACCCGCTGTAGgcg                                    >  2:39733/1‑149 (MQ=255)                                                                                                   tAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAATCTCCACCCGCTGCAGgcgc                                   <  7:262447/149‑1 (MQ=255)                                                                                                   tAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAATCTCCACCCGCTGCAGgcgc                                   <  6:113174/149‑1 (MQ=255)                                                                                                         tGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGaa                                                       <  4:191070/123‑1 (MQ=255)                                                                                                         tGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGaa                                                       >  3:191070/1‑123 (MQ=255)                                                                                                         tGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAATCTCCACCCGCTGCAGGCGCTCgctg                             >  8:103524/1‑149 (MQ=255)                                                                                                            aaCGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAATCTCCACCCGCTGCAGGCGCTCGCTGCTc                          <  2:39304/149‑1 (MQ=255)                                                                                                             aCGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAATCTCCACCCGCTGCAg                                       >  8:257346/1‑135 (MQ=255)                                                                                                             aCGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAATCTCCACCCGCTGCAg                                       <  7:257346/135‑1 (MQ=255)                                                                                                                      gccgTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAATCTCCACCCGCTGCAGGCGCTCGCTGCTCCAg                       <  7:311710/142‑1 (MQ=255)                                                                                                                      gccgTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAATCTCCACCCGCTGCAGGCGCTCGCTGCTCCAg                       >  8:311710/1‑142 (MQ=255)                                                                                                                        cgTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAATCTCCACCCGCTGCAGGCGCTCGCTGCTCCAGGCGGCCTTg              <  5:148202/149‑1 (MQ=255)                                                                                                                         gTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAAt                                                      >  6:186447/1‑108 (MQ=255)                                                                                                                         gTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAAt                                                      <  5:186447/108‑1 (MQ=255)                                                                                                                                 gcTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAATCTCCACCCGCTGCAGGCGCTCGCTGCTCCAGGCGGCCTTGAGCTGGccc     >  2:76928/1‑149 (MQ=255)                                                                                                                                  cTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAATCTCCACCCGCTGCAGGCGCTCGCTGCTCCAGGCGGCCTTGAGCTGGCCCa    <  5:59355/149‑1 (MQ=255)                                                                                                                                     gTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTgccaaataccagcgcgaagacggcggattgcgtttcaccattacctgcctggtggcgtttgccgtgttccaggcagggctgttgatctggattgctacccgctaagaccgcat  <  2:251002‑M2/148‑114 (MQ=255)                                                                                                                                        tttGGCTACGCGCTCATCCCGCTCGCGCAGTTgccaaataccagcgcgaagacggcggattgcgtttcaccattacctgcctggtggcgtttgccgtgttccaggcagggctgttgatct                           <  2:74133‑M2/120‑89 (MQ=255)                                                                                                                                        tttGGCTACGCGCTCATCCCGCTCGCGCAGTTgccaaataccagcgcgaagacggcggattgcgtttcaccattacctgcctggtggcgtttgccgtgttccaggcagggctgttgatct                           >  1:74133‑M2/1‑32 (MQ=255)                                                                                                                                           ggCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAATCTcc                                                  >  2:236226/1‑94 (MQ=255)                                                                                                                                           ggCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAATCTcc                                                  <  1:236226/94‑1 (MQ=255)                                                                                                                                             |                                                                                                                                            GCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCATCCCGCTCGCGCAGTTGCCCTTCCTTTTCCTGCAGTTGCTGGTCGGCCTGCTGCAGCAGGCTGGCGGCATCCAGAATCTCCACCCGCTGCAGGCGCTCGCTGCTCCAGGCGGCCTTGAGCTGGCCCACC  >  NC_002947/2052782‑2053061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.