New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2688065	34 (0.640)	4 (0.080)	4/240	NT	9.7%	coding (132/462 nt)	PP_2355	two‑component system response regulator
	?	NC_002947	= 2688121	42 (0.840)					coding (76/462 nt)	PP_2355	two‑component system response regulator

GCATCACGGTGGGGATGCTGCGCAGCTCTGCGGTGGCGCGCACTTCCTTGAGCACTTCCAGGCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGAGCATGATGGTAGCGATGCCT  >  NC_002947/2687920‑2688212                                                                                                                                                  |                                                                                                                                                    gCATCACGGTGGGGATGCTGCGCAGCTCTGCGGTGGCGCGCACTTCCTTGAGCACTTCCAGGCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAag                                                                                                                                                  <  7:238228/149‑1 (MQ=255)          tGGGGATGCTGCGCAGCTCTGCGGTGGCGCGCACTTCCTTGAGCACTTCCAGGCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAgg                                                                                                                                         <  1:301685/149‑1 (MQ=255)                               cGGTGGCGCGCACTTCCTTGAGCACTTCCAGGCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACgcagc                                                                                                                    <  2:41253/149‑1 (MQ=255)                                 gTGGCGCGCACTTCCTTGAGCACTTCCAGGCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCAc                                                                                                                  >  5:280459/1‑149 (MQ=255)                                          aCTTCCTTGTGCACTTCCAGGCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACgc                                                                                                                       <  1:260011/135‑1 (MQ=255)                                          aCTTCCTTGTGCACTTCCAGGCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACgc                                                                                                                       >  2:260011/1‑135 (MQ=255)                                          aCTTCCTTGAGCACTTCCAGGCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCcagttggccaacgaggtcatcgtctgcgtgacggcgccgatgcc                                                                                                         >  4:316596‑M1/1‑105 (MQ=255)                                            ttCCTTGAGCACTTCCAGGCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGt                                                                                                       >  7:133455/1‑149 (MQ=255)                                                  gAGCACTTCCAGGCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGcc                                                                                                  >  6:262755/1‑148 (MQ=255)                                                   aGCACTTCCAGGCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCcagttggccaacgaggtcatcgtgctgcgtgacggcgccgatgccctcgacta                                                                                                >  3:222857‑M1/1‑96 (MQ=255)                                                        ttCCAGGCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGt                                                                                                       >  8:296700/1‑137 (MQ=255)                                                        ttCCAGGCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGt                                                                                                       <  7:296700/137‑1 (MQ=255)                                                        ttCCAGGCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGgc                                                                                           <  8:85091‑M2/149‑3 (MQ=255)                                                          ccAGGCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCg                                                                                                                                   >  1:105338/1‑107 (MQ=255)                                                          ccAGGCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCg                                                                                                                                   <  2:105338/107‑1 (MQ=255)                                                          ccAGGCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGgctg                                                                                         <  8:327002‑M2/149‑5 (MQ=255)                                                           cAGGCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCcagttggccaacgaggtcatcgtctgcgtgacggcgccgatgccctcgactacttgctgcg                                                                                        <  3:316596‑M1/149‑62 (MQ=255)                                                              gCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCcagttggccaacgaggtcatcgtgctgcgtgacggcgccgatgccctcgactacttgctgcgcc                                                                                     <  4:222857‑M1/149‑65 (MQ=255)                                                                     aCCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGc                                                                              >  2:288953/1‑149 (MQ=255)                                                                           ggCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCcagca                                                                         <  5:262755/148‑1 (MQ=255)                                                                                tttCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGc                                                                              >  5:105615/1‑138 (MQ=255)                                                                                tttCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGc                                                                              <  6:105615/138‑1 (MQ=255)                                                                                    aGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTc                                                               <  1:288953/149‑1 (MQ=255)                                                                                     ggTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTcc                                                              <  7:327002/149‑1 (MQ=255)                                                                                      gTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGgc                                                                                           >  8:196299‑M2/1‑117 (MQ=255)                                                                                      gTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGgc                                                                                           <  7:196299‑M2/119‑3 (MQ=255)                                                                                         gAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAAc                                                                                               >  5:54708/1‑112 (MQ=255)                                                                                         gAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAAc                                                                                               <  6:54708/112‑1 (MQ=255)                                                                                          aGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGTGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTCCAGGtc                                                         >  2:122495/1‑149 (MQ=255)                                                                                          aGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGTGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTCCAGGtc                                                         >  2:127320/1‑149 (MQ=255)                                                                                              aCAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGTGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTCCAGGTCTCgg                                                     <  1:122495/149‑1 (MQ=255)                                                                                              aCAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGTGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTCCAGGTCTCgg                                                     <  1:127320/149‑1 (MQ=255)                                                                                                 gCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTCCAGGTCTCggggg                                                  <  6:280459/149‑1 (MQ=255)                                                                                                      gCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTc                                             >  8:122361/1‑149 (MQ=255)                                                                                                           gTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGa                                        <  2:39865/149‑1 (MQ=255)                                                                                                                 gTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACcag                                    >  2:319548/1‑147 (MQ=255)                                                                                                                             ggCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACTATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGa                      <  7:122361/149‑1 (MQ=255)                                                                                                                             ggCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCtt                        >  5:176973/1‑147 (MQ=255)                                                                                                                             ggCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCtt                        <  8:133455/147‑1 (MQ=255)                                                                                                                             ggCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGa                      <  1:319548/149‑1 (MQ=255)                                                                                                                               cATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGAGc                    <  7:85091/149‑1 (MQ=255)                                                                                                                                aTAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGAGCa                   >  2:116365/1‑149 (MQ=255)                                                                                                                                           ggcgCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGgctgcgccgcaacgcctatgccgagcgcgatgacggcaaccctgccgtgctgttactcgacctgaaactgcccaaggtcgacggc        <  4:222857‑M2/149‑86 (MQ=255)                                                                                                                                             cgcAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGAGCATGATGGTAGCGAt      <  3:250790/149‑1 (MQ=255)                                                                                                                                             cgcAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAG‑ACGATGACCTCGTTGGCCAACTGgctgcgccgcaacgcctatgccgagcgcgatgacggcaaccctgccgtgctgttactcgacctgaaactgcccaaggtcgacggcctg     <  3:316596‑M2/149‑89 (MQ=255)                                                                                                                                              gcagcaAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGAGCatga                <  6:44252/138‑1 (MQ=255)                                                                                                                                              gcagcaAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGAGCatga                >  5:44252/1‑138 (MQ=255)                                                                                                                                               cAGCcagttggccaacgaggtcatcgtgctgcgtgacggcgccgatgccctcgactacttgctgcgccgcaacgcctatgccgagcgcgatgacggcaaccctgccgtgctgttactcgacctgaaactgcccaaggtcgacggcctgg    <  8:327002‑M1/149‑146 (MQ=255)                                                                                                                                                 gCcagttggccaacgaggtcatcgtgctgcgtgacggcgccgatgccctcgactacttgctgcgccgcaacgcctatgccgagcgcgatgacggcaaccctgccgtgctgttactcgacctgaaactgcccaaggtcgacggcctggaa  <  8:85091‑M1/149‑148 (MQ=255)                                                                                                                                                 gCcagttggccaacgaggtcatcgtgctgcgtgacggcgccgatgccctcgactacttgctgcgccgcaacgcctatgccgagcgcgatgacggcaaccctgccgtgctgttactcgac                                <  7:196299‑M1/119‑118 (MQ=255)                                                                                                                                                 gCcagttggccaacgaggtcatcgtgctgcgtgacggcgccgatgccctcgactacttgctgcgccgcaacgcctatgccgagcgcgatgacggcaaccctgccgtgctgttactcgac                                >  8:196299‑M1/1‑2 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GCATCACGGTGGGGATGCTGCGCAGCTCTGCGGTGGCGCGCACTTCCTTGAGCACTTCCAGGCCGTCGACCTTGGGCAGTTTCAGGTCGAGTAACAGCACGGCAGGGTTGCCGTCATCGCGCTCGGCATAGGCGTTGCGGCGCAGCAAGTAGTCGAGGGCATCGGCGCCGTCACGCAGCACGATGACCTCGTTGGCCAACTGGCTGCGCTCCAGGGCCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGAGCATGATGGTAGCGATGCCT  >  NC_002947/2687920‑2688212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.