New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2717225	37 (0.700)	4 (0.080)	4/242	NT	9.2%	coding (1940/2301 nt)	cti	esterified fatty acid cis/trans isomerase
	?	NC_002947	= 2717281	44 (0.870)					coding (1996/2301 nt)	cti	esterified fatty acid cis/trans isomerase

CGCGTTCTGCTC‑ACGGCCGCAGATGAGCGAAGAATTCCGCAATGCCGAGCAGTCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTC  >  NC_002947/2717082‑2717373                                                                                                                                                 |                                                                                                                                                     cgcgTTCTGCTCTACGGCCGCAGATGAGCGAAGAATTCCGCAATGCCGAGCAGTCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGc                                                                                                                                                  <  1:293631/149‑1 (MQ=255)     ttCTGCTC‑ACGGCCGCAGATGAGCGAAGAATTCCGCAATGCCGAGCAGTCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCg                                                                                                                                             >  8:231654/1‑149 (MQ=255)        tGCTC‑ACGGCCGCAGATGAGCGAAGAATTCCGCAATGCCGAGCAGTCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGt                                                                                                                                            >  4:108419/1‑147 (MQ=255)          cTC‑ACGGCCGCAGATGAGCGAAGAATTCCGCAATGCCGAGCAGTCTCTCAGCCGACTGGTGTCACGCCCGGCTGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAg                                                                                                                                         <  6:227072/148‑1 (MQ=255)          cTC‑ACGGCCGCAGATGAGCGAAGAATTCCGCAATGCCGAGCAGTCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAg                                                                                                                                         <  3:108419/148‑1 (MQ=255)              aCGGCCGCAGATGAGCGAAGAATTCCGCAATGCCGAGCAGTCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCTAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGgt                                                                                                                                       <  2:311812/147‑1 (MQ=255)              aCGGCCGCAGATGAGCGAAGAATTCCGCAATGCCGAGCAGTCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAg                                                                                                                                         >  6:32755/1‑145 (MQ=255)              aCGGCCGCAGATGAGCGAAGAATTCCGCAATGCCGAGCAGTCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAg                                                                                                                                         <  5:32755/145‑1 (MQ=255)               cGGCCGCAGATGAGCGAAGAATTCCGCAATGCCGAGCAGTCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTa                                                                                                                                    <  7:231654/149‑1 (MQ=255)                            gCGAAGAATTCCGCAATGCCGAGAAGTCGCTCAGCCGACTGCTGTCACGCCCGCCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGAacgccacgttgctgtgcgcgcggttgcgcag                                                                                                                       >  5:210007‑M1/1‑118 (MQ=255)                             cGAAGAATTCCGCAATGCCGAGCAGTCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTgcgc                                                                                                                       >  3:194531/1‑148 (MQ=255)                                 gaaTTCCGCAATGCCGAGCAGTCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACcg                                                                                                                  >  8:176441/1‑149 (MQ=255)                                    ttCCGCAATGCCGAGCAGTCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACcgcgc                                                                                                               <  7:147516/149‑1 (MQ=255)                                        gCAATGCCGAGCAGTCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGAacgccacgttgctgtgcgcgcggttgcgcagcaggctgtacac                                                                                                           >  2:79292‑M1/1‑106 (MQ=255)                                          aaTGCCGAGCAGTCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAg                                                                                                         <  4:194531/149‑1 (MQ=255)                                               cGAGCAGTCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACg                                                                                                    >  1:127607/1‑149 (MQ=255)                                                gAGCAGTCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTATAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAACAACGt                                                                                                   >  1:247526/1‑149 (MQ=255)                                                      tCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTt                                                                                             <  4:42015‑M2/149‑2 (MQ=255)                                                        gCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTtcc                                                                                           <  6:202034‑M2/149‑4 (MQ=255)                                                             gCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGAacgccacgttgctgtgcgcgcggttgcgcagcaggctgtacacctgacgctggccgtcctgccc                                                                                      <  1:79292‑M1/149‑65 (MQ=255)                                                               cGAGTGGTGTCACGCCCTGCGGGCGGGCTGAAGGTGATCAACCAGTTGGCCGAGCCGACCATGCTGCGTATCGATGGGGAGGAacgcgacgttgctgtgcgcgcggttgcgcagcaggctgtacacctgacgctggcggtcctgccctt                                                                                    <  6:210007‑M1/149‑67 (MQ=255)                                                               cGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTggg                                                                                    <  7:176441/149‑1 (MQ=255)                                                                  cTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGa                                                                                 <  3:42015/149‑1 (MQ=255)                                                                      tgtCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGa                                                                                 <  4:232503/145‑1 (MQ=255)                                                                      tgtCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGa                                                                                 >  3:232503/1‑145 (MQ=255)                                                                            gCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGc                                                                       >  8:107272/1‑149 (MQ=255)                                                                            gCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGc                                                                       >  7:55328/1‑149 (MQ=255)                                                                                             aaGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAACAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTg                                                        <  2:247526/147‑1 (MQ=255)                                                                                               ggTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATa                                                    >  3:127195/1‑149 (MQ=255)                                                                                                      aaCCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATaccctgac                                             >  3:195453/1‑149 (MQ=255)                                                                                                        ccAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATaccctgaccc                                           >  7:238553/1‑149 (MQ=255)                                                                                                         cAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATaccctgaccct                                          <  7:107272/149‑1 (MQ=255)                                                                                                         cAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATaccctgaccct                                          <  4:161314/149‑1 (MQ=255)                                                                                                                   aGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCgggg                                <  5:202034/149‑1 (MQ=255)                                                                                                                    ggCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCggggg                               <  4:195453/149‑1 (MQ=255)                                                                                                                      cGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTg                             <  8:55328/149‑1 (MQ=255)                                                                                                                                    aTCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAg                                                                                >  6:179877/1‑84 (MQ=255)                                                                                                                                    aTCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAg                                                                                <  5:179877/84‑1 (MQ=255)                                                                                                                                    aTCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATaccc                                                 >  7:29016/1‑115 (MQ=255)                                                                                                                                    aTCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATaccc                                                 <  8:29016/115‑1 (MQ=255)                                                                                                                                       gAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTAccc               <  6:90053/146‑1 (MQ=255)                                                                                                                                       gAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTAccc               >  5:90053/1‑146 (MQ=255)                                                                                                                                        aaGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAAc           <  8:238553/149‑1 (MQ=255)                                                                                                                                        aaGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCATGGTGAGGCGTACCGCAACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAAc           >  1:282870/1‑149 (MQ=255)                                                                                                                                        aaGGGCAGGACCGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTCGCGTtcctccccatcgatacgcagcatggtcggctcggccaactggttgatcaccttcagcccgcccgcagggcgtgacaccactcg           <  6:210007‑M2/149‑84 (MQ=255)                                                                                                                                          gggCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTtcctgcccttcgatacgcagcatggtcgcctcgggcaactggttgatcaccttcagcccggccgccgggcgtgacaccagtcggc         <  1:79292‑M2/149‑86 (MQ=255)                                                                                                                                               ggAacgccacgttgctgtgcgcgcggttgcgcagcaggctgtacacctgacgctggccgtcctgcccttcgatacgcagcatggtcgcctcgggcaactggttgatcaccttcagcccggccgccgggcgtgacaccagtcggctgagc    <  6:202034‑M1/149‑147 (MQ=255)                                                                                                                                                gACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCt    >  8:334182/1‑148 (MQ=255)                                                                                                                                                 aacgccacgttgctgtgcgcgcggttgcgcagcaggctgtacacctgacgctggccgtcctgcccttcgatacgcagcatggtcgcctcgggcaactggttgatcaccttcagcccggccgccgggcgtgacaccagtcggctgagcga  <  4:42015‑M1/149‑149 (MQ=255)                                                                                                                                                 aCGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTc  <  4:127195/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     CGCGTTCTGCTC‑ACGGCCGCAGATGAGCGAAGAATTCCGCAATGCCGAGCAGTCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTC  >  NC_002947/2717082‑2717373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.