New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2717225	37 (0.700)	4 (0.080)	4/242	NT	9.2%	coding (1940/2301 nt)	cti	esterified fatty acid cis/trans isomerase
	?	NC_002947	= 2717281	44 (0.870)					coding (1996/2301 nt)	cti	esterified fatty acid cis/trans isomerase

TCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTCAACATCCCGACCAAGGATGTGCCGGAGTTCGTCGAGGACATGGAGTACGCCAAA  >  NC_002947/2717134‑2717427                                                                                                                                                    |                                                                                                                                                   tCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTt                                                                                                                                                   <  4:42015‑M2/149‑2 (MQ=255)   gCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTtcc                                                                                                                                                 <  6:202034‑M2/149‑4 (MQ=255)          cGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTggg                                                                                                                                          <  7:176441/149‑1 (MQ=255)             cTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGa                                                                                                                                       <  3:42015/149‑1 (MQ=255)                 tgtCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGa                                                                                                                                       <  4:232503/145‑1 (MQ=255)                 tgtCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGa                                                                                                                                       >  3:232503/1‑145 (MQ=255)                       gCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGc                                                                                                                             >  7:55328/1‑149 (MQ=255)                       gCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGc                                                                                                                             >  8:107272/1‑149 (MQ=255)                                        aaGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAACAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTg                                                                                                              <  2:247526/147‑1 (MQ=255)                                          ggTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATa                                                                                                          >  3:127195/1‑149 (MQ=255)                                                 aaCCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATaccctgac                                                                                                   >  3:195453/1‑149 (MQ=255)                                                   ccAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATaccctgaccc                                                                                                 >  7:238553/1‑149 (MQ=255)                                                    cAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATaccctgaccct                                                                                                <  4:161314/149‑1 (MQ=255)                                                    cAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATaccctgaccct                                                                                                <  7:107272/149‑1 (MQ=255)                                                              aGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCgggg                                                                                      <  5:202034/149‑1 (MQ=255)                                                               ggCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCggggg                                                                                     <  4:195453/149‑1 (MQ=255)                                                                 cGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTg                                                                                   <  8:55328/149‑1 (MQ=255)                                                                               aTCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAg                                                                                                                                      >  6:179877/1‑84 (MQ=255)                                                                               aTCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAg                                                                                                                                      <  5:179877/84‑1 (MQ=255)                                                                               aTCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATaccc                                                                                                       <  8:29016/115‑1 (MQ=255)                                                                               aTCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATaccc                                                                                                       >  7:29016/1‑115 (MQ=255)                                                                                  gAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTAccc                                                                     <  6:90053/146‑1 (MQ=255)                                                                                  gAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTAccc                                                                     >  5:90053/1‑146 (MQ=255)                                                                                   aaGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAAc                                                                 <  8:238553/149‑1 (MQ=255)                                                                                   aaGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCATGGTGAGGCGTACCGCAACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAAc                                                                 >  1:282870/1‑149 (MQ=255)                                                                                   aaGGGCAGGACCGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTCGCGTtcctccccatcgatacgcagcatggtcggctcggccaactggttgatcaccttcagcccgcccgcagggcgtgacaccactcg                                                                 <  6:210007‑M2/149‑84 (MQ=255)                                                                                     gggCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTtcctgcccttcgatacgcagcatggtcgcctcgggcaactggttgatcaccttcagcccggccgccgggcgtgacaccagtcggc                                                               <  1:79292‑M2/149‑86 (MQ=255)                                                                                           gACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCt                                                          >  8:334182/1‑148 (MQ=255)                                                                                            aCGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTc                                                        <  4:127195/149‑1 (MQ=255)                                                                                                          gtgtACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTtcctgcccttcgatacgcagcatggtcgcctcgggcaactggttgatcaccttcagcccggccgccgggcgtgacaccagtcggctgagcgactgctcggcattgc                                          >  2:79292‑M2/1‑43 (MQ=255)                                                                                                               cAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTCAACATCCCGACCAAGGAt                                      <  2:127607/148‑1 (MQ=255)                                                                                                                aGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCa                                                                            <  2:289857/109‑1 (MQ=255)                                                                                                                aGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCa                                                                            >  1:289857/1‑109 (MQ=255)                                                                                                                  ccTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTCAACATCCCGACCAAGGATGTGc                                  >  7:293374/1‑149 (MQ=255)                                                                                                                    tgctgcGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTCAACATCCCGACCAAGGATGTGCCg                                >  4:259447/1‑149 (MQ=255)                                                                                                                    tgctgcGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTCAACATCCCGACCAAGGATGTGCCg                                >  8:136460/1‑149 (MQ=255)                                                                                                                      ctgcGCAACCGCGCGCACAGCAACGTGGCGTtcctgcccttcgatacgcagcatggtcgcctcgggcaactggttgatcaccttcagcccggccggcgggcgtgacagcagtcggctgagcgacttctcggcattgcggaattcttcgc                              >  5:210007‑M2/1‑31 (MQ=255)                                                                                                                          gcAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATCCCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTCAACATCCCGACCAAGGATGTGCCGGAGTtc                          >  8:279124/1‑149 (MQ=255)                                                                                                                          gcAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTCAACATCCCGACCAAGGAtg                                     <  6:197296/138‑1 (MQ=255)                                                                                                                          gcAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTCAACATCCCGACCAAGGAtg                                     >  5:197296/1‑138 (MQ=255)                                                                                                                          gcAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTCAACATCCCGACCAAGGATGTGCCGGAGTtc                          >  6:309598/1‑149 (MQ=255)                                                                                                                          gcAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTCAACATCCCGACCAAGGATGTGCCGGAGTtc                          <  8:293374/149‑1 (MQ=255)                                                                                                                           cAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTcc                                                                             <  7:98169/97‑1 (MQ=255)                                                                                                                           cAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTcc                                                                             >  8:98169/1‑97 (MQ=255)                                                                                                                             aCCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTCAACATCCCGACCAAGGATGTGCCGGAGTtcgtc                       <  2:282870/149‑1 (MQ=255)                                                                                                                                gcgcgcACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTCAACATCCCGACCAAGGATGTGCCGGAGTTCGTCGAg                    <  5:309598/149‑1 (MQ=255)                                                                                                                                     cacaGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTCAACATCCCGACCAAGGATGTGCCGGAGTTCGTCGAGGACAt               <  7:136460/149‑1 (MQ=255)                                                                                                                                         gCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTCAACATCCCGACCAAGGATGTGCCGGAGTTCGTCGAGGACATGGAg           >  3:302206/1‑149 (MQ=255)                                                                                                                                            aCGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCATCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTCAACATCCCGACCAAGGATGTGCCGGAGTTCGTCGAGGACATg              <  2:160647/143‑1 (MQ=255)                                                                                                                                            aCGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTCAACATCCCGACCAAGGATGTGCCGGAGTTCGTCGAGGACATGGAGTAc        >  2:86594/1‑149 (MQ=255)                                                                                                                                            aCGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAACCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTCAACATCCCGACCAAGGATGTGCCGGAGTTCGTCGAGGACATg              >  1:160647/1‑143 (MQ=255)                                                                                                                                                  cGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTCAACATCCCGACCAAGGATGTGCCGGAGTTCGTCGAGGACATGGAGTACGCCaaa  <  3:259447/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   TCGCTCAGCCGACTGGTGTCACGCCCGGCGGCCGGGCTGAAGGTGATCAACCAGTTGCCCGAGGCGACCATGCTGCGTATCGAAGGGCAGGACGGCCAGCGTCAGGTGTACAGCCTGCTGCGCAACCGCGCGCACAGCAACGTGGCGTTCCTGCTGGGTGAGGCGTACCGCTACCAGCCGGGGCTGGATACCCTGACCCTGTACCCGGGGGTGCTCTCCAGCTACCCGAACTTCATCTTCAACATCCCGACCAAGGATGTGCCGGAGTTCGTCGAGGACATGGAGTACGCCAAA  >  NC_002947/2717134‑2717427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.