| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3110329 | 49 (0.930) | 4 (0.080) | 4/244 | NT | 7.5% | intergenic (‑149/‑46) | yhdF/PP_2724 | oxidoreductase YhdF/hypothetical protein |
| ? | NC_002947 | = 3110355 | 51 (1.010) | intergenic (‑175/‑20) | yhdF/PP_2724 | oxidoreductase YhdF/hypothetical protein | |||||
CTGGAAGCTCCTGCAGGGTTGGAACGCTCATTCCCGTTCGAAAGGCGCGCCAGGCCAGTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGACGAACGAGAGGATGTTCGGTACGCCCAAGGAGCGGCTGGATTTCTATCGAC > NC_002947/3110182‑3110474 | cTGGAAGCTCCTGCAGGGTTGGAACGCTCATTCCCGTTCGAAAGGCGCGCCAGGCCAGTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACgg > 8:276849/1‑149 (MQ=255) gAAGCTCCTGCAGGGTTGGAACGCTCATTCCCGTTCGAAAGGCGCGCCAGGCCAGTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACgggg < 7:276849/148‑1 (MQ=255) gAAGCTCCTGCAGGGTTGGAACGCTCATTCCCGTTCGAAAGGCGCGCCAGGCCAGTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGc < 6:285351/149‑1 (MQ=255) aGCTCCTGCAGGGTTGGAACGCTCATTCCCGTTCGAAAGGCGCGCCAGGCCAGTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGTTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCtt < 1:16197/149‑1 (MQ=255) gCTCCTGCAGGGTTGGAACGCTCATTCCCGTTCGAAAGGCGCGCCAGGCCAGTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTg > 4:203459/1‑149 (MQ=255) tCCTGCAGGGTTGGAACGCTCATTCCCGTTCGAAAGGCGCGCCAGGCCAGTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCt > 6:288777/1‑149 (MQ=255) cAGGGTTGGAACGCTCATTCCCGTTCGAAAGGCGCGCCAGGCCAGTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCAt > 3:9241/1‑149 (MQ=255) gggTTGGAACGCTCATTCCCGTTCGAAAGGCGCGCCAGGCCAGTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATgg < 6:92308/149‑1 (MQ=255) aTTCCCGTTCGAAAGGCGCGCCAGGCCAGTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCAcgt < 8:34870‑M2/148‑4 (MQ=255) cGTTCGAAAGGCGCGCCAGGCCAGTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGtcatc > 7:311274/1‑147 (MQ=255) gTTCGAAAGGCGCGCCAGGCCAGTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAg < 1:179268/149‑1 (MQ=255) gTTCGAAAGGCGCGCCAGGCCAGTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAg < 5:288777/149‑1 (MQ=255) cGAAAGGCGCGCCAGGCCAGTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGa < 2:310848/148‑1 (MQ=255) gAAAGGCGCGCCAGGCCAGTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGt > 5:178884/1‑149 (MQ=255) aaGGCGCGCCAGGCCAGTGTTGTAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCt > 7:273266/1‑149 (MQ=255) gcgcgcCAGCCCAGTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGa < 1:67987/142‑1 (MQ=255) gcgcgcCAGCCCAGTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGa > 2:67987/1‑142 (MQ=255) cgcCAGGCCAGTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGAACCAATACCAAGTGAATTTTTACCCACCGCGTAGCTCTCCCGATGACGGGCCTTGATGCCATGGTTTAGCCCCACGTCAAAAAGTAGACTCCAGTg > 6:201013/1‑149 (MQ=255) ccagTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGaa < 8:311274/149‑1 (MQ=255) aGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCGTGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGcc > 3:153647/1‑149 (MQ=255) gTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGt < 6:46310/123‑1 (MQ=255) gTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGt > 5:46310/1‑123 (MQ=255) gTGAATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCt > 8:28391/1‑149 (MQ=255) gATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGtgggcctcacccatgccagcaagccccgtcagcg < 8:104425‑M1/114‑35 (MQ=255) gATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGtgggcctcacccatgccagcaagccccgtcagcg > 7:104425‑M1/1‑80 (MQ=255) gATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTc < 3:163438/148‑1 (MQ=255) cTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGaa < 5:344573/148‑1 (MQ=255) gCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATga < 3:203459/149‑1 (MQ=255) gacgaGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATgaga < 7:34870/149‑1 (MQ=255) agtggggTTGTTGGACGCATTCCCATTGAATTTTTACCCTCCGCCTAGCTCTAACTGTGACGGGGCTTGCTGGCATGTGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAgatc < 5:201013/144‑1 (MQ=255) gaGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAgatc > 3:305484/1‑148 (MQ=255) aGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAgatcga < 4:9241/149‑1 (MQ=255) gCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCg < 4:31502/134‑1 (MQ=255) ggTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCa < 7:28391/149‑1 (MQ=255) gTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAgatcgat > 6:199448/1‑146 (MQ=255) tGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGtgggcctcacccatgccagcaagccccatcagcggtagagctaggcgga > 3:214463‑M1/1‑51 (MQ=255) tGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGtgggcctcacccatgccagcaagccccatcagcggtagagctaggcgga < 4:214463‑M1/100‑50 (MQ=255) tGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGacgaa > 7:165323/1‑149 (MQ=255) cACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGacgaac > 5:29900/1‑148 (MQ=255) ccATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGacgaacga > 3:323005/1‑147 (MQ=255) cAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGACGAACGAGAGGATGtt < 6:29900/149‑1 (MQ=255) aGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATga > 6:316904/1‑121 (MQ=255) gAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCGTGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGACGAACGAGAGGATGTTCgg < 4:153647/148‑1 (MQ=255) gAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGac > 7:273799/1‑130 (MQ=255) gAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGac < 8:273799/130‑1 (MQ=255) gAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGACGAACGAGAGGATGTTCgg > 8:286819/1‑148 (MQ=255) cccTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGACGAACGAGAGGATGTTCGGTACGCCCaa < 4:305484/148‑1 (MQ=255) ccTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGACGAACgaga > 4:296910/1‑128 (MQ=255) ccTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGACGAACgaga < 3:296910/128‑1 (MQ=255) cTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGACGAACGAGAGGAt > 3:305655/1‑131 (MQ=255) cTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGACGAACGAGAGGAt < 4:305655/131‑1 (MQ=255) tCCGCCTAGCTCTACCGCTGATGGGGCTTGCTGGCATGGGTGAGGCCCAcgtcagcggtagagctaggcggagggtaaaaattcactgggaatgggtgca < 4:214463‑M2/100‑52 (MQ=255) tCCGCCTAGCTCTACCGCTGATGGGGCTTGCTGGCATGGGTGAGGCCCAcgtcagcggtagagctaggcggagggtaaaaattcactgggaatgggtgca > 3:214463‑M2/1‑49 (MQ=255) gCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGa < 6:231847/109‑1 (MQ=255) gCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGa > 5:231847/1‑109 (MQ=255) cGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCAcgtcagcggtagagctaggcggagggtaaaaattcactgggaatgggtgcatcaaccgctcgtcgctcagcacgaagatc < 8:104425‑M2/114‑81 (MQ=255) cGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCAcgtcagcggtagagctaggcggagggtaaaaattcactgggaatgggtgcatcaaccgctcgtcgctcagcacgaagatc > 7:104425‑M2/1‑34 (MQ=255) cGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGACGAACGAGAGGATGTTCGGTACGCCCAAGGAGCGGCTGGATTTCTAt < 5:199448/149‑1 (MQ=255) cGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACAGGAGATCGATCAGACGAACGAGAGGATGTTCGGTACGCCCAAGGAGCGGCTGGATTTCTAt > 5:159230/1‑149 (MQ=255) gCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGACGAACGAGAGGATGTTCGGTACGCCCAAGGAGCGGCTGGATTTCTATc > 2:32244/1‑149 (MQ=255) cTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCg > 2:175550/1‑81 (MQ=255) aCGtgggcctcacccatgccagcaagccccgtcagcggtagagctaggcggagggtaaaaattcactgggaatgggtgcatcaaccgctcgtcgctcagcacgaagatccacttcaacactggcctggcgcgcctttcgaacgggaat < 8:34870‑M1/148‑146 (MQ=255) ggggCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGa < 7:7889/39‑1 (MQ=255) ggggCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGa > 8:7889/1‑39 (MQ=255) ggggCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGACGAACGAGAGGATGTTCGGTACGCCCAAGGAGCGGCTg > 2:221778/1‑133 (MQ=255) ggggCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGACGAACGAGAGGATGTTCGGTACGCCCAAGGAGCGGCTg < 1:221778/133‑1 (MQ=255) | CTGGAAGCTCCTGCAGGGTTGGAACGCTCATTCCCGTTCGAAAGGCGCGCCAGGCCAGTGTTGAAGTGGATCTTCGTGCTGAGCGACGAGCGGTTGATGCACCCATTCCCAGTGAATTTTTACCCTCCGCCTAGCTCTACCGCTGACGGGGCTTGCTGGCATGGGTGAGGCCCACGTCATCAAGGAGTCTGCAGTGCCTCGAATCATCACGCCTTCCACGCCGGAACATGAGATCGATCAGACGAACGAGAGGATGTTCGGTACGCCCAAGGAGCGGCTGGATTTCTATCGAC > NC_002947/3110182‑3110474 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |