New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3221462 =	34 (0.640)	3 (0.060)	3/238	NT	9.7%	coding (1232/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer
	?	NC_002947	3221508 =	24 (0.490)					coding (1186/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer

TTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCA  >  NC_002947/3221317‑3221594                                                                                                                                                  |                                                                                                                                     ttCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTACAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGc                                                                                                                                    <  5:220513/148‑1 (MQ=255)   cGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACTTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTc                                                                                                                                  <  1:52471/148‑1 (MQ=255)    gCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCAACCACGGCAAAGCCCCGCCCTTGCTCGc                                                                                                                                >  1:291280/1‑149 (MQ=255)    atcgacagcctgtccttgagcatcggcgacctgggcaacagcgtgctcagctcggtgcaggccatggaacaactggaagcagaaacccagcacgtcggctcggtgctgacggtgatccgcagcatcgccgaacagaccaaccTGCTCGc                                                                                                                                <  6:182591‑M1/7‑1 (MQ=255)                  tCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCt                                                                                                                  >  8:107824/1‑149 (MQ=255)                      gTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGa                                                                                                              >  1:209745/1‑149 (MQ=255)                         cAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATg                                                                                                            <  7:172938/148‑1 (MQ=255)                           aGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGCGCCGCTTCGATggcg                                                                                                         >  4:57459/1‑149 (MQ=255)                                 tgctgGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGt                                                                                                                        <  6:80067/128‑1 (MQ=255)                                 tgctgGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGt                                                                                                                        >  5:80067/1‑128 (MQ=255)                                   ctgGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAg                                                                                                 >  3:347304/1‑149 (MQ=255)                                        gcTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGc                                                                                              >  2:199582/1‑147 (MQ=255)                                             cgtgctcagctcggtgcaggccatggaacaactggaagcagaaacccagcacgtcgggtcggtgctgacggtgatccgcagcatcgccgaacagaccaaccTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAgg                                                                                       <  2:185519‑M1/48‑1 (MQ=255)                                             cgtgctcagctcggtgcaggccatggaacaactggaagcagaaacccagcacgtcggctcggtgctgacggtgatccgcagcatcgccgaacagaccaaccTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAgg                                                                                       >  3:53379‑M1/102‑149 (MQ=255)                                              ttGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGCGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAgg                                                                                       <  3:57459/148‑1 (MQ=255)                                                gCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTg                                                                                    >  7:189946/1‑149 (MQ=255)                                                 cAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTgg                                                                                   >  4:293705/1‑149 (MQ=255)                                                 cAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTg                                                                                    <  3:244175/148‑1 (MQ=255)                                                 cAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTg                                                                                    <  4:347304/148‑1 (MQ=255)                                                  aGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGt                                                                                  >  2:1228/1‑149 (MQ=255)                                                  aGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGt                                                                                  >  7:28850/1‑149 (MQ=255)                                                    gcgcTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCt                                                                                <  8:28850/149‑1 (MQ=255)                                                    agctcggtgcaggccatggaacaactggaagcagaaacccagcacgtcgggtcggtgctgacggtgatccgcagcatcgccgaacagaccaaccTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGt                                                                                  >  1:185519‑M1/95‑147 (MQ=255)                                                          gatgatGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCg                                                                           <  7:107824/148‑1 (MQ=255)                                                          gatgatGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCAACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCATGGAGAGCAGGTTGGTCTGTTCgg                                                                          <  2:291280/149‑1 (MQ=255)                                                           atgatgTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGc                                                                         <  5:359814/149‑1 (MQ=255)                                                                   ttGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAg                                                                                           <  2:263528/123‑1 (MQ=255)                                                                   ttGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAg                                                                                           >  1:263528/1‑123 (MQ=255)                                                                      gATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGt                                                                                  >  5:161369/1‑129 (MQ=255)                                                                      gATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGt                                                                                  <  6:161369/129‑1 (MQ=255)                                                                            cgcgGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCAcc                                                         <  2:209745/148‑1 (MQ=255)                                                                            cgcgGTGGAAGCGGTCGTTTTCTGAGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCAcc                                                         <  6:143782/148‑1 (MQ=255)                                                                                          tCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCg                                          <  8:189946/149‑1 (MQ=255)                                                                                                       cAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGttt                             <  3:293705/149‑1 (MQ=255)                                                                                                                          gCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCt                                   <  2:219021/124‑1 (MQ=255)                                                                                                                          gCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCt                                   >  1:219021/1‑124 (MQ=255)                                                                                                                          gCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCAt          <  1:1228/149‑1 (MQ=255)                                                                                                                               cACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGt                               >  4:174402/1‑123 (MQ=255)                                                                                                                               cACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGt                               <  3:174402/123‑1 (MQ=255)                                                                                                                                  ggCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGTGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCa  <  1:199582/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                     TTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCA  >  NC_002947/3221317‑3221594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.