New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3221462 =	34 (0.640)	3 (0.060)	3/238	NT	9.7%	coding (1232/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer
	?	NC_002947	3221508 =	24 (0.490)					coding (1186/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer

TTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCCCAGGTCGCCGATGCTCAAGGACAGGCTGTCGAT  >  NC_002947/3221361‑3221649                                                                                                                                                     |                                                                                                                                              cgtgctcagctcggtgcaggccatggaacaactggaagcagaaacccagcacgtcgggtcggtgctgacggtgatccgcagcatcgccgaacagaccaaccTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAgg                                                                                                                                              <  2:185519‑M1/48‑1 (MQ=255) cgtgctcagctcggtgcaggccatggaacaactggaagcagaaacccagcacgtcggctcggtgctgacggtgatccgcagcatcgccgaacagaccaaccTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAgg                                                                                                                                              >  3:53379‑M1/102‑149 (MQ=255)  ttGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGCGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAgg                                                                                                                                              <  3:57459/148‑1 (MQ=255)    gCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTg                                                                                                                                           >  7:189946/1‑149 (MQ=255)     cAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTgg                                                                                                                                          >  4:293705/1‑149 (MQ=255)     cAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTg                                                                                                                                           <  4:347304/148‑1 (MQ=255)     cAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTg                                                                                                                                           <  3:244175/148‑1 (MQ=255)      aGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGt                                                                                                                                         >  7:28850/1‑149 (MQ=255)      aGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGt                                                                                                                                         >  2:1228/1‑149 (MQ=255)        gcgcTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCt                                                                                                                                       <  8:28850/149‑1 (MQ=255)        agctcggtgcaggccatggaacaactggaagcagaaacccagcacgtcgggtcggtgctgacggtgatccgcagcatcgccgaacagaccaaccTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGt                                                                                                                                         >  1:185519‑M1/95‑147 (MQ=255)              gatgatGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCg                                                                                                                                  <  7:107824/148‑1 (MQ=255)              gatgatGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCAACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCATGGAGAG‑CAGGTTGGTCTGTTCgg                                                                                                                                 <  2:291280/149‑1 (MQ=255)               atgatgTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGc                                                                                                                                <  5:359814/149‑1 (MQ=255)                          gATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGt                                                                                                                                         >  5:161369/1‑129 (MQ=255)                          gATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGt                                                                                                                                         <  6:161369/129‑1 (MQ=255)                                cgcgGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCAcc                                                                                                                <  2:209745/148‑1 (MQ=255)                                cgcgGTGGAAGCGGTCGTTTTCTGAGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCAcc                                                                                                                <  6:143782/148‑1 (MQ=255)                                              tCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCg                                                                                                 <  8:189946/149‑1 (MQ=255)                                                           cAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGttt                                                                                    <  3:293705/149‑1 (MQ=255)                                                                              gCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCt                                                                                          >  1:219021/1‑124 (MQ=255)                                                                              gCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCt                                                                                          <  2:219021/124‑1 (MQ=255)                                                                              gCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCAt                                                                 <  1:1228/149‑1 (MQ=255)                                                                                   cACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGt                                                                                      >  4:174402/1‑123 (MQ=255)                                                                                   cACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGt                                                                                      <  3:174402/123‑1 (MQ=255)                                                                                      ggCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGTGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCa                                                         <  1:199582/149‑1 (MQ=255)                                                                                                accaacctgctcgccctgaacgccgccatcgaagcggcacgggctggcgagcaGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGACCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCt                                                  >  1:185519‑M2/54‑147 (MQ=255)                                                                                                     cctgctcgccctgaacgccgccatcgaagcggcacgggctggcgagcaGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACg                                           >  3:53379‑M2/49‑149 (MQ=255)                                                                                                     cctgctcgccctgaacgccgccatcgaagcggcacgggctggcgagcaGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGACCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACg                                           <  2:185519‑M2/101‑1 (MQ=255)                                                                                                       GCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCt                                         <  1:68307‑M1/149‑1 (MQ=255)                                                                                                          CGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTg                                     <  8:267177‑M1/149‑1 (MQ=255)                                                                                                           GCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGa                                                <  7:305847‑M1/137‑1 (MQ=255)                                                                                                           GCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGa                                                >  8:305847‑M1/1‑137 (MQ=255)                                                                                                            CCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAgtt                                                                        >  4:142420‑M1/1‑112 (MQ=255)                                                                                                            CCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAgtt                                                                        >  4:137105‑M1/1‑112 (MQ=255)                                                                                                            CCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGcc                                   >  7:267177‑M1/1‑149 (MQ=255)                                                                                                              aGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTg                                     <  7:61578/145‑1 (MQ=255)                                                                                                              aGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTg                                     >  8:61578/1‑145 (MQ=255)                                                                                                                    tGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCCCAGGTCGc                           <  2:68307/149‑1 (MQ=255)                                                                                                                          ttCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCTGCGATGCTGCGGATAACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCCCAGGTCGACGATga                     >  1:267957/1‑148 (MQ=255)                                                                                                                              aTGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTACACCGAGCTGAGCACGCTGTTGCCCAGGTCGCCGATGCTc                   >  7:89644/1‑147 (MQ=255)                                                                                                                                       ttCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCCCAGGTCGCCGATGCTCAAGGACAGGCt        >  5:182591/1‑149 (MQ=255)                                                                                                                                              gcgagcaGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCCCAGGTCGCCGATGCTCAAGGACAGGCTGTCGAt  <  6:182591‑M2/142‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              TTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAG‑CAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCCCAGGTCGCCGATGCTCAAGGACAGGCTGTCGAT  >  NC_002947/3221361‑3221649

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.