New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3316859 =	47 (0.890)	5 (0.100)	5/244	NT	9.8%	intergenic (‑62/+111)	ribC/treSA	riboflavin synthase/trehalose synthase A
	?	NC_002947	3316895 =	47 (0.930)					intergenic (‑98/+75)	ribC/treSA	riboflavin synthase/trehalose synthase A

GTGAACTGGTTGTGGCCCGGGTAGGTGGTCACATCAAGCAGAGGGCGGACGGCCTGGACGATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCA  >  NC_002947/3316724‑3317001                                                                                                                                        |                                                                                                                                               aacctggacccgtacgaggcgctgtgcctgcggatcgtcaacagcagcgggcatgtttgaatctggcgtggccatgccgtcgcaaaccggtttcgcccacaagcacgccgcctgccccgcgcaggcgccagactcGCAAGACCAGGCtt                                                                                                                                   <  8:210650‑M1/14‑1 (MQ=255)               gCCCGGGTAGGTGGTCACATCAAGCAGAGGGCGGACGGCCTGGACGATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGc                                                                                                                     >  4:119171/1‑149 (MQ=255)                 ccGGGTAGGTGGTCACATCAAGCAGAGGGCGGACGGCCTGGACGATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCg                                                                                                                   >  7:289396/1‑149 (MQ=255)                       acgtcgtCACATCTAGCAGCGGCCGGACGGCCTGGACGATGCCGGTGTACATGGAGGTGCTCCTGGGCACCGAAAAGAACACTTCCGAACGCTATGCCCGTAGCGCAGTTAATGCCAGACCCGGCTGCCTGGCTGGCAAGCCGGCTTGc                                                                                                             <  6:293187/144‑1 (MQ=255)                         tgcctgcggatcgtcaacagcagcgggcatgtttgaatctggcgtggccatgccgtcgcaaaccggtttcgcccacaagcacgccgcctgccccgcgcaggcgccagactcGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGa                                                                                                           >  7:210650‑M1/112‑149 (MQ=255)                         gtggtCACATCAAGCAGAGGGCGGACGGCCTGGACGATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGc                                                                                                             >  8:32610/1‑147 (MQ=255)                             tCACATCAAGCAGAGGGCGGACGGCCTGGACGATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCt                                                                                                       >  6:277467/1‑149 (MQ=255)                               cggatcgtcaacagcagcgggcatgtttgaatctggcgtggccatgccgtcgcaaaccggtttcgcccacaagcacgccgcctgccccgcgcaggcgccagactcGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTg                                                                                                      >  2:120780‑M1/106‑148 (MQ=255)                                caTCAAGCAGAGGGCGGACGGCCTGGACGATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGgc                                                                                                    <  5:277467/149‑1 (MQ=255)                                caTCAAGCAGAGGGCGGACGGCCTGGACGATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGgc                                                                                                    <  3:119171/149‑1 (MQ=255)                                 aTCAAGCAGAGGGCGGACGGCCTGGACGATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGgcg                                                                                                   >  2:148955/1‑149 (MQ=255)                                                   ggCCTGGACGATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCCCCGCGCAggcgc                                                                                 <  7:32610/149‑2 (MQ=255)                                                        tttgaatctggcgtggccatgccgtcgcaaaccggtttcgcccacaagcacgccgcctgccccgcgcaggcgccagactcg                                                                                                                                                <  1:183887‑M1/1‑1 (MQ=255)                                                        tttgaatctggcgtggccatgccgtcgcaaaccggtttcgcccacaagcacgccgcctgccccgcgcaggcgccagactcg                                                                                                                                                >  2:183887‑M1/81‑81 (MQ=255)                                                            gATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCAGTAGCGAAGTAAATGCAAGACCACGCTTACTGGCTGGCAAGCCGGCTTGCGAGACTGGCGCCTGCGCGGGGCAGGAGGCGTGCTtga                                                                        >  8:301525/1‑148 (MQ=255)                                                                 cGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCtt                                                                          >  3:220703/1‑142 (MQ=255)                                                                 cGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCtt                                                                          <  4:220703/142‑1 (MQ=255)                                                                   gtgtACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAg                                                                                     <  6:176282/129‑1 (MQ=255)                                                                   gtgtACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAg                                                                                     >  5:176282/1‑129 (MQ=255)                                                                        cATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCctggctgg                                                                                                                          <  5:155574/87‑1 (MQ=255)                                                                        cATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCctggctgg                                                                                                                          >  6:155574/1‑87 (MQ=255)                                                                           ggAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGttt                                                         >  1:226044/1‑149 (MQ=255)                                                                            gAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGttt                                                         <  8:289396/148‑1 (MQ=255)                                                                              gTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGc                                                                            >  8:251835/1‑127 (MQ=255)                                                                              gTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGc                                                                            <  7:251835/127‑1 (MQ=255)                                                                                 gCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACg                                                   >  8:158470/1‑149 (MQ=255)                                                                                   tCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACgg                                                  >  5:146313/1‑148 (MQ=255)                                                                                   tCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACgg                                                  >  3:180093/1‑148 (MQ=255)                                                                                    aaaccggtttcgcccacaagcacgccgcctgcccagcgcaggcgccagactcGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGc                                                                                                             >  4:267524‑M1/53‑88 (MQ=255)                                                                                    aaaccggtttcgcccacaagcacgccgcctgcccagcgcaggcgccagactcGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGc                                                                                                             <  3:267524‑M1/36‑1 (MQ=255)                                                                                        ggCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATgg                                             <  1:148955/148‑1 (MQ=255)                                                                                        ggCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATg                                              <  4:180093/147‑1 (MQ=255)                                                                                           aCGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACgg                                                  <  8:208537/140‑1 (MQ=255)                                                                                           aCGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACgg                                                  >  7:208537/1‑140 (MQ=255)                                                                                             ggAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCtt                                                                          >  7:248331/1‑114 (MQ=255)                                                                                             ggAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCtt                                                                          <  8:248331/114‑1 (MQ=255)                                                                                              gaaaagaaaaCTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGc                                       >  8:310983/1‑148 (MQ=255)                                                                                                       aCTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCaaa                             <  2:226044/149‑1 (MQ=255)                                                                                                             gAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGcc                       >  7:165592/1‑149 (MQ=255)                                                                                                             gAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGcc                       >  1:309024/1‑149 (MQ=255)                                                                                                                   tATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGcc                       >  7:21588/1‑143 (MQ=255)                                                                                                                   tATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGcc                       <  8:21588/143‑1 (MQ=255)                                                                                                                   tATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCgctgc                 >  5:234478/1‑149 (MQ=255)                                                                                                                    aTGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACg                                                   >  2:245820/1‑114 (MQ=255)                                                                                                                    aTGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCAGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACg                                                   <  1:245820/114‑1 (MQ=255)                                                                                                                       cccGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGtt             <  7:158470/149‑1 (MQ=255)                                                                                                                         cGTAGCTCAGTAAATGCTAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCTGGGCAGGCGGCGTGCTTGTGGGCGAATCCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGa           <  7:301525/149‑1 (MQ=255)                                                                                                                         cGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGa           <  7:310983/149‑1 (MQ=255)                                                                                                                         cGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGa           <  6:146313/149‑1 (MQ=255)                                                                                                                         cGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGa           <  6:234478/149‑1 (MQ=255)                                                                                                                         cGTAGCGCAGTAAATGCAAGACCAGGCTTCCCGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGa           >  2:322561/1‑149 (MQ=255)                                                                                                                          gTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGAc          <  4:72281/149‑1 (MQ=255)                                                                                                                          gTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGAc          >  3:72281/1‑149 (MQ=255)                                                                                                                                  gTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCCAGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCa  >  8:145889/1‑149 (MQ=255)                                                                                                                                        GCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGa                                                                  >  5:353079‑M1/1‑79 (MQ=255)                                                                                                                                        GCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGa                                                                  <  6:353079‑M1/79‑1 (MQ=255)                                                                                                                                        |                                                                                                                                               GTGAACTGGTTGTGGCCCGGGTAGGTGGTCACATCAAGCAGAGGGCGGACGGCCTGGACGATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCA  >  NC_002947/3316724‑3317001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.