New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3523486	NA (NA)	4 (0.080)	4/242	NT	NA	coding (199/1533 nt)	PP_3114	transposase
	?	NC_002947	= 3523529	NA (NA)					coding (242/1533 nt)	PP_3114	transposase

AGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGCCAGCGCTTGTTCGGGCGCAAGACCGAGCAGACTGGCGATGCGGCGACACCACAGTTGCCACTCTTCGACGAAGCG  >  NC_002947/3523346‑3523494                                                                                                                                             |         agaaGATGATCCACGTGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGATGTTGCGCTGTTGCGCCAGCGCTTGTTCGGGCGCAAGACCGAGCAGACTGGCGATGCGGCGACACCACAGTTGCCACTCTTCGACGAAGCg  <  2:181741/146‑1 (MQ=0)                                                                                                                                             |         AGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGCCAGCGCTTGTTCGGGCGCAAGACCGAGCAGACTGGCGATGCGGCGACACCACAGTTGCCACTCTTCGACGAAGCG  >  NC_002947/3523346‑3523494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.