New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3667666	41 (0.780)	4 (0.080)	4/242	NT	9.1%	coding (1021/1368 nt)	PP_3231	hypothetical protein
	?	NC_002947	= 3667696	41 (0.810)					coding (991/1368 nt)	PP_3231	hypothetical protein

ACAACACATGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGAGTTGTGAGCCCAG  >  NC_002947/3667519‑3667814                                                                                                                                                    |                                                                                                                                                     acaacaCATGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATcggcg                                                                                                                                                     <  8:310943/149‑1 (MQ=255)         tGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCAc                                                                                                                                             <  5:264849/149‑1 (MQ=255)           gcgcAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCt                                                                                                                                           >  2:29452/1‑149 (MQ=255)                        cgcTGTGGGGCGCGCCAGTAGCTCAGGCAGGCTGGCACGCCTGAGAGGAGTAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGGCTGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGACCGCGGCCAGGTGGCcgccgccgat                                                                                                                              <  6:122417/149‑8 (MQ=255)                         gcTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTg                                                                                                                             <  1:29452/149‑1 (MQ=255)                           tgtgGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCggcggcggc                                                                                                                                                <  8:231061/128‑1 (MQ=255)                           tgtgGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCggcggcggc                                                                                                                                                >  7:231061/1‑128 (MQ=255)                               ggTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATg                                                                                                                       <  1:190930‑M2/149‑2 (MQ=255)                                              tCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCatggccaccgaccgcggccaggtggccgccgccgatgact                                                                                                              >  8:125715‑M1/1‑103 (MQ=255)                                              tCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCatggccaccgaccgcggccaggtggccgccgccgatgact                                                                                                              <  7:125715‑M1/143‑41 (MQ=255)                                                    aggcTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAac                                                                                                              >  2:95512/1‑137 (MQ=255)                                                    aggcTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAac                                                                                                              <  1:95512/137‑1 (MQ=255)                                                        tGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCg                                                                                               >  7:83129/1‑148 (MQ=255)                                                            aCGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAgc                                                                                          >  5:246738/1‑149 (MQ=255)                                                            aCGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAgc                                                                                          >  2:11854/1‑149 (MQ=255)                                                                         ggAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACcgc                                                                                                         <  8:285374/121‑1 (MQ=255)                                                                         ggAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACcgc                                                                                                         >  7:285374/1‑121 (MQ=255)                                                                         ggAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGc                                                                             <  6:246738/149‑1 (MQ=255)                                                                          gAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCt                                                                            >  5:263913/1‑149 (MQ=255)                                                                                aTGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTgg                                                                                                                            <  5:14946/95‑1 (MQ=255)                                                                                aTGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTgg                                                                                                                            >  6:14946/1‑95 (MQ=255)                                                                                aTGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGGCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGa                                                                      <  5:237845/149‑1 (MQ=255)                                                                                  gCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCGACCTGGCCGCGGTCGGTGGCCATGCCGCTCACCACCGCGTCGGGCCCGCAAGCGCTGCGGCGAAGCTGGCCGagg                                                                    >  8:278123/1‑147 (MQ=255)                                                                                   cTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATg                                                                    <  2:190930/148‑1 (MQ=255)                                                                                   cTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGt                                                                   >  1:41405/1‑149 (MQ=255)                                                                                      ccAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGtt                                                                  <  5:97582/147‑1 (MQ=255)                                                                                       cAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCatggccaccgaccgcggccaggtggccgccgccgatg                                                                                                                 >  5:159351‑M1/1‑62 (MQ=255)                                                                                       cAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCatggccaccgaccgcggccaggtggccgccgccgatg                                                                                                                 <  6:159351‑M1/99‑38 (MQ=255)                                                                                              cGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCt                                                        <  1:11854/149‑1 (MQ=255)                                                                                                   cgcgAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTc                                                     <  3:190041/147‑1 (MQ=255)                                                                                                     cgAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGc                                                 <  2:41405/149‑1 (MQ=255)                                                                                                     cgAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGc                                                 <  6:263913/149‑1 (MQ=255)                                                                                                      gAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGcc                                                >  4:51510/1‑149 (MQ=255)                                                                                                               aTTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCt                                                                                       >  7:145974/1‑101 (MQ=255)                                                                                                               aTTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCt                                                                                       <  8:145974/101‑1 (MQ=255)                                                                                                                  tCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGc                                    >  1:139083/1‑149 (MQ=255)                                                                                                                    cTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTg                                  >  4:126026/1‑149 (MQ=255)                                                                                                                          cTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCGGCGGCAt                            >  5:32490/1‑149 (MQ=255)                                                                                                                             cATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGc                         >  6:278261/1‑149 (MQ=255)                                                                                                                             cATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGAAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGc                         >  5:189855/1‑149 (MQ=255)                                                                                                                               tGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCg                       <  5:73620/149‑1 (MQ=255)                                                                                                                                   gCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGatat                   >  3:285421/1‑149 (MQ=255)                                                                                                                                   gCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGatat                   <  3:51510/149‑1 (MQ=255)                                                                                                                                     cGTGCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATgg                 <  4:285421/149‑1 (MQ=255)                                                                                                                                     cGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATgg                 <  3:126026/149‑1 (MQ=255)                                                                                                                                       tCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGa               <  8:83129/149‑1 (MQ=255)                                                                                                                                           aGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATgccgatgactgggacggcgacatgcagatcaaggaaatccgaccttcgcgcagcgacagctgggagcatcagttccgcctcgcaggcgtgccagcctgcctga                 <  7:125715‑M2/143‑104 (MQ=255)                                                                                                                                           aGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATgccgatgactgggacggcgacatgcagatcaaggaaatccgaccttcgcgcagcgacagctgggagcatcagttccgcctcgcaggcgtgccagcctgcctga                 >  8:125715‑M2/1‑40 (MQ=255)                                                                                                                                              cATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATgccgatgactgggacggcgacatgcagatcaaggaaatccgaccttcgcgcagcgacagctg                                                          >  5:159351‑M2/1‑37 (MQ=255)                                                                                                                                              cATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATgccgatgactgggacggcgacatgcagatcaaggaaatccgaccttcgcgcagcgacagctg                                                          <  6:159351‑M2/99‑63 (MQ=255)                                                                                                                                               aTCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCGGCGGCATTGCCGATATGGGAGTTGTGa        <  6:32490/148‑1 (MQ=255)                                                                                                                                                tCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGa               <  6:161165/140‑1 (MQ=255)                                                                                                                                                tCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGa               >  5:161165/1‑140 (MQ=255)                                                                                                                                                    catggccaccgaccgcggccaggtggccgccgccgatgactgggacggcgacatgcagatcaaggaaatccgaccttcgcgcagcgacagctgggagcatcagttccgcctcgcaggcgtgccagcctgcctgagcgactggcgcgacc  <  1:190930‑M1/149‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     ACAACACATGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAAGGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGAGTTGTGAGCCCAG  >  NC_002947/3667519‑3667814

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.