New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3864155	46 (0.870)	4 (0.080)	4/242	NT	7.6%	coding (3078/3282 nt)	PP_3413	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 3864199	53 (1.050)					coding (3122/3282 nt)	PP_3413	two‑component system sensor histidine kinase/response regulator

GTTCGACCTGGCCGAACTGCGTCACCTGACCCAGGACGACGAACAGTTGACGCGGCATTTGCTGGAGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAGGCA  >  NC_002947/3864011‑3864299                                                                                                                                                 |                                                                                                                                                 gTTCGACCTGGCCGAACTGCGTCACCTGACCCAGGACGACGAACAGTTGACGCGGCATTTGCTGGAGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGccc                                                                                                                                              <  5:13410/149‑1 (MQ=255)              gAACTGCGTCACCTGACCCAGGACGACGAACAGTTGACGCGGCATTTGCTGGAGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCAt                                                                                                                                 >  3:76295/1‑149 (MQ=255)                      tCACCTGTCCCAGGACGACGAACAGTTGACGCGGCATTTGCTGGAGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTg                                                                                                                         <  7:70712/149‑1 (MQ=255)                               ccAGGACGACGAACAGTTGACGCGGCATTTGCTGGAGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCaaaa                                                                                                                <  3:173025/149‑1 (MQ=255)                                  ggACTACGTACAGTCGACGCGGCATTTGGTGGAGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGACCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGa                                                                                                             <  8:308269/149‑1 (MQ=255)                                   gacgacGAACAGTTGACGCGGCATTTGCTGGAGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCaccctgatcattttggcgccacccttgatgcggtggg                                                                                                             >  2:147403‑M1/1‑111 (MQ=255)                                         gaACAGTTGACGCGGCATTTGCTGGAGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGt                                                                                                      >  3:293423/1‑149 (MQ=255)                                              gTTGACGCGGCATTTGCTGGAGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCaccctgatcattttggcgccacccttgatgcggtgggcaagggcgcgca                                                                                                 <  1:147403‑M1/149‑50 (MQ=255)                                                  aCGCGGCATTTGCTGGAGCAATTGTCGATAAGCGTCGGTGAAGATGTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCa                                                                                                                                       >  1:248852/1‑107 (MQ=255)                                                  aCGCGGCATTTGCTGGAGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCa                                                                                                                                       <  2:248852/107‑1 (MQ=255)                                                    gcgGCATTTGCTGGAGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTgg                                                                                           >  3:338812/1‑149 (MQ=255)                                                         aTTTGCTGGAGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCaaa                                                                                      <  4:76295/149‑1 (MQ=255)                                                                  aGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGaa                                                                             <  4:293423/149‑1 (MQ=255)                                                                       ttGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTAt                                                                        <  4:338812/149‑1 (MQ=255)                                                                         gTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATc                                                                       >  3:131672/1‑148 (MQ=255)                                                                             aTAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTTTGGTCAAAGACTGTGa                                                                              <  6:227468/137‑1 (MQ=255)                                                                             aTAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGa                                                                              >  5:227468/1‑137 (MQ=255)                                                                             aTAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCt                                                                          >  3:230033/1‑141 (MQ=255)                                                                             aTAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCt                                                                          <  4:230033/141‑1 (MQ=255)                                                                                      ggTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACg                                                          >  6:302294/1‑148 (MQ=255)                                                                                         gAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCaa                                                       >  7:335160/1‑148 (MQ=255)                                                                                             aTCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAggg                                                  >  1:343212/1‑149 (MQ=255)                                                                                                  gccgccCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTAt                                                                        >  3:329318/1‑122 (MQ=255)                                                                                                  gccgccCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTAt                                                                        <  4:329318/122‑1 (MQ=255)                                                                                                  gccgccCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCg                                                                      >  8:297358/1‑124 (MQ=255)                                                                                                  gccgccCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCg                                                                      <  7:297358/124‑1 (MQ=255)                                                                                                  gccgccCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGc                                              <  2:343212/148‑1 (MQ=255)                                                                                                  gccgccCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGc                                              <  3:231569/148‑1 (MQ=255)                                                                                                           cGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTc                                      <  5:302294/147‑1 (MQ=255)                                                                                                              gCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTc                                      <  6:270088/144‑1 (MQ=255)                                                                                                              gCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTc                                      >  5:270088/1‑144 (MQ=255)                                                                                                                cTTGTCAACAGACGCCCCTGATGAAACCGTGCGCaccctgatcattttggcgccacccttgatgcggtgggcaagggcgc                                                                                                    >  2:45248‑M1/1‑34 (MQ=255)                                                                                                                cTTGTCAACAGACGCCCCTGATGAAACCGTGCGCaccctgatcattttggcgccacccttgatgcggtgggcaagggcgc                                                                                                    <  1:45248‑M1/80‑47 (MQ=255)                                                                                                                 ttGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCAACCGCATCAAGGGTGGAGCCAAAATGATCATGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCTAGCACGCCCACGCAAAAGGCCTGCCGAACGTCGAACAgcg                              >  6:91823/1‑149 (MQ=255)                                                                                                                      aaCAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGc                                                 <  5:77689/125‑1 (MQ=255)                                                                                                                      aaCAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGc                                                 >  6:77689/1‑125 (MQ=255)                                                                                                                      aaCAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAgcgcgcg                          >  7:58710/1‑148 (MQ=255)                                                                                                                      aaCAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAgcgcgcg                          >  1:19787/1‑148 (MQ=255)                                                                                                                      aaCAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAgcgcgcg                          >  6:312096/1‑148 (MQ=255)                                                                                                                          gACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACt                     <  8:58710/149‑1 (MQ=255)                                                                                                                               cccTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGc                   >  6:302507/1‑146 (MQ=255)                                                                                                                               cccTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCaa                 >  8:68381/1‑148 (MQ=255)                                                                                                                               cccTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCaa                 <  7:68381/148‑1 (MQ=255)                                                                                                                               cccTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCaa                 <  5:302507/148‑1 (MQ=255)                                                                                                                                ccTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCTCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAAc                      <  7:259922/142‑1 (MQ=255)                                                                                                                                ccTGATGAAACCGTCCGCGACCTTGCCCACCGCATCAACCGTCGCGCCAAAATGATCAGGGAGCGCACTGTGGTCAAACACAGACAAGCTATCTAGCACGCCCACCCAAAACCGATGCCGACCGTCGAAAAGCGACCGAAACtagaacg               >  8:259922/1‑143 (MQ=255)                                                                                                                                      gaAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCt         >  3:206129/1‑149 (MQ=255)                                                                                                                                       aaaCCGTGCGCTCCCTTGCCCACCGCATCAAGGGTGGCTCCAAAATGATCAGGGTGCGCACTGTGGTAAAAGACTGTTAAGCTATCGAGCACGCACACGCAAAAGTGCTTCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCATCCt         <  5:91823/148‑1 (MQ=255)                                                                                                                                         aCCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTg        >  1:244908/1‑147 (MQ=255)                                                                                                                                         aCCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCa      <  5:312096/149‑1 (MQ=255)                                                                                                                                           cGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAgg    >  2:266554/1‑149 (MQ=255)                                                                                                                                             tGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTgcgcacggtttcatcaggggcgtctgttgacaaggcacgcagggcggccagatcttcaccgacgcttatcgacaattgctccagcaaatgccgcgtcaac  <  1:147403‑M2/149‑101 (MQ=255)                                                                                                                                                gcgcCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTgcgcacggtttcatcaggggcgtctgttgacaag                                                                    >  2:45248‑M2/1‑46 (MQ=255)                                                                                                                                                gcgcCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTgcgcacggtttcatcaggggcgtctgttgacaag                                                                    <  1:45248‑M2/80‑35 (MQ=255)                                                                                                                                                 |                                                                                                                                                 GTTCGACCTGGCCGAACTGCGTCACCTGACCCAGGACGACGAACAGTTGACGCGGCATTTGCTGGAGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAGGCA  >  NC_002947/3864011‑3864299

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.