| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3864155 | 46 (0.870) | 4 (0.080) | 4/242 | NT | 7.6% | coding (3078/3282 nt) | PP_3413 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | = 3864199 | 53 (1.050) | coding (3122/3282 nt) | PP_3413 | two‑component system sensor histidine kinase/response regulator | |||||
GAACAGTTGACGCGGCATTTGCTGGAGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAGGCACTGCTTGACGAGATGCGCGAGGCGCTCAATGCAATTGCAGCGTCGAG > NC_002947/3864051‑3864346 | gaACAGTTGACGCGGCATTTGCTGGAGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGt > 3:293423/1‑149 (MQ=255) gcgGCATTTGCTGGAGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTgg > 3:338812/1‑149 (MQ=255) aTTTGCTGGAGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCaaa < 4:76295/149‑1 (MQ=255) aGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGaa < 4:293423/149‑1 (MQ=255) ttGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTAt < 4:338812/149‑1 (MQ=255) gTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATc > 3:131672/1‑148 (MQ=255) aTAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTTTGGTCAAAGACTGTGa < 6:227468/137‑1 (MQ=255) aTAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGa > 5:227468/1‑137 (MQ=255) aTAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCt < 4:230033/141‑1 (MQ=255) aTAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCt > 3:230033/1‑141 (MQ=255) ggTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACg > 6:302294/1‑148 (MQ=255) gAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCaa > 7:335160/1‑148 (MQ=255) aTCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAggg > 1:343212/1‑149 (MQ=255) gccgccCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTAt < 4:329318/122‑1 (MQ=255) gccgccCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTAt > 3:329318/1‑122 (MQ=255) gccgccCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCg < 7:297358/124‑1 (MQ=255) gccgccCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCg > 8:297358/1‑124 (MQ=255) gccgccCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGc < 3:231569/148‑1 (MQ=255) gccgccCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGc < 2:343212/148‑1 (MQ=255) cGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTc < 5:302294/147‑1 (MQ=255) gCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTc < 6:270088/144‑1 (MQ=255) gCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTc > 5:270088/1‑144 (MQ=255) ttGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCAACCGCATCAAGGGTGGAGCCAAAATGATCATGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCTAGCACGCCCACGCAAAAGGCCTGCCGAACGTCGAACAgcg > 6:91823/1‑149 (MQ=255) aaCAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGc < 5:77689/125‑1 (MQ=255) aaCAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGc > 6:77689/1‑125 (MQ=255) aaCAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAgcgcgcg > 7:58710/1‑148 (MQ=255) aaCAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAgcgcgcg > 1:19787/1‑148 (MQ=255) aaCAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAgcgcgcg > 6:312096/1‑148 (MQ=255) gACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACt < 8:58710/149‑1 (MQ=255) cccTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGc > 6:302507/1‑146 (MQ=255) cccTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCaa > 8:68381/1‑148 (MQ=255) cccTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCaa < 5:302507/148‑1 (MQ=255) cccTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCaa < 7:68381/148‑1 (MQ=255) ccTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCTCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAAc < 7:259922/142‑1 (MQ=255) ccTGATGAAACCGTCCGCGACCTTGCCCACCGCATCAACCGTCGCGCCAAAATGATCAGGGAGCGCACTGTGGTCAAACACAGACAAGCTATCTAGCACGCCCACCCAAAACCGATGCCGACCGTCGAAAAGCGACCGAAACtagaacg > 8:259922/1‑143 (MQ=255) gaAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCt > 3:206129/1‑149 (MQ=255) aaaCCGTGCGCTCCCTTGCCCACCGCATCAAGGGTGGCTCCAAAATGATCAGGGTGCGCACTGTGGTAAAAGACTGTTAAGCTATCGAGCACGCACACGCAAAAGTGCTTCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCATCCt < 5:91823/148‑1 (MQ=255) aCCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTg > 1:244908/1‑147 (MQ=255) aCCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCa < 5:312096/149‑1 (MQ=255) cGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAgg > 2:266554/1‑149 (MQ=255) tGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTgcgcacggtttcatcaggggcgtctgttgacaaggcacgcagggcggccagatcttcaccgacgcttatcgacaattgctccagcaaatgccgcgtcaac < 1:147403‑M2/149‑101 (MQ=255) gcgcCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTgcgcacggtttcatcaggggcgtctgttgacaag < 1:45248‑M2/80‑35 (MQ=255) gcgcCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTgcgcacggtttcatcaggggcgtctgttgacaag > 2:45248‑M2/1‑46 (MQ=255) ccTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGa > 8:18023/1‑75 (MQ=255) ccTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGa < 7:18023/75‑1 (MQ=255) cccACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTgcgcacggtttcatcaggggcgtctgttgacaaggcacgcagggcggccagatcttcaccgacgcttatcgacaattgctccagcaaatgccgcgtcaactgttcgtcgtc > 2:147403‑M2/1‑37 (MQ=255) ccACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAGGCACTGCTTGAc > 2:13517/1‑145 (MQ=255) cGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAGGCACTGCTTGACGAGATgcg > 1:144382/1‑149 (MQ=255) gCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAGGCACTGCTTGACGAGATgcgc < 4:265817/149‑1 (MQ=255) aTCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAGGCACTGCTTGACGAGATgcgc > 7:270428/1‑147 (MQ=255) aaGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAGGCACTGCTTGACGAGATGCGCGAgg < 2:144382/148‑1 (MQ=255) tGGCGCCAAAAAGCTCACGGGGCGCACCGGGGTCAAACCCGTTGCACCGAACCACCACCCCCCCGCCAAACGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAGGCACTGCTTGACGAGATGCGCGAGGCGCTCa < 6:42450/149‑1 (MQ=255) gcgcCAAAATGATCAGGGTGCGCACTGTTGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAGGCACTGCTTGAc < 4:104864/128‑1 (MQ=255) gcgcCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAGGCACTGCTTGAc > 3:104864/1‑128 (MQ=255) gcgcCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAGGCACTGCTTGACGAGATGCGCGAGGCGCTCAAt > 3:26779/1‑149 (MQ=255) cgcCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAGGCACTGCTTGACGAGATGCGCGAGGCGCTCAAt > 7:248292/1‑148 (MQ=255) gcCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAGGCACTGCTTGACGAGATGCGCGAGGCGCTCAATg > 4:129063/1‑148 (MQ=255) aaaaTGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAGGCACTGCTTGACGAGATGCGCGAGGCGCTCAATGCAAt > 4:122920/1‑149 (MQ=255) aaaTGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAGGCACTGCTTGACGAGATGCGCGAGGCGCTCAATGCAAtt > 1:164998/1‑149 (MQ=255) gTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAGGCACTGCTTGACGAGATGCGCGAGGCGCTCAATGCAATTGCAGCGTCGAg < 2:164998/149‑1 (MQ=255) gTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAGGCACTGCTTGACGAGATGCGCGAGGCGCTCAATGCAATTGCAGCGTCGAg < 1:13517/149‑1 (MQ=255) | GAACAGTTGACGCGGCATTTGCTGGAGCAATTGTCGATAAGCGTCGGTGAAGATCTGGCCGCCCTGCGTGCCTTGTCAACAGACGCCCCTGATGAAACCGTGCGCGCCCTTGCCCACCGCATCAAGGGTGGCGCCAAAATGATCAGGGTGCGCACTGTGGTCAAAGACTGTGAAGCTATCGAGCACGCCCACGCAAAAGGGCTGCCGACCGTCGAACAGCGCGCGCAACTGCAAGTCAGCCTGCAGGCACTGCTTGACGAGATGCGCGAGGCGCTCAATGCAATTGCAGCGTCGAG > NC_002947/3864051‑3864346 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |