New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4095364	44 (0.830)	5 (0.100)	5/240	NT	9.6%	coding (120/765 nt)	PP_3603	GntR family transcriptional regulator
	?	NC_002947	= 4095423	53 (1.060)					coding (61/765 nt)	PP_3603	GntR family transcriptional regulator

AGCACGAATGTACCGATGCCGTGGCGAGTCTCTACCTGCCCGGCGGCCTGCAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAG  >  NC_002947/4095227‑4095507                                                                                                                                          |                                                                                                                                                 aGCACGAATGTACCGATGCCGTGGCGAGTCTCTACCTGCCCGGCGGCCTGCAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGcc                                                                                                                                       >  1:291264/1‑149 (MQ=255)            aCCGATGCCGTGGCGAGTCTCTACCTGCCCGGCGGCCTGCAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGc                                                                                                                           >  6:110165/1‑149 (MQ=255)             ccGATGCCGTGGCGAGTCTCTACCTGCCCGGCGGCCTGCAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGc                                                                                                                           <  5:110165/148‑1 (MQ=255)             ccGATGCCGTGGCGAGTCTCTACCTGCCCGGCGGCCTGCAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGc                                                                                                                           <  2:291264/148‑1 (MQ=255)                          gAGTCTCTACCTGCCCGGCGGCCTGCAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCagtctggcccaggaactggtcacggtgctgaccgaa                                                                                                              >  2:272796‑M1/1‑113 (MQ=255)                                 tACCTGCCCGGCGGCCTGCAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCagtctggcccaggaactggtcacggtgctgaccgaacgcattc                                                                                                       >  2:250067‑M1/1‑106 (MQ=255)                                 tACCTGCCCGGCGGCCTGCAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTGAGCACCGTGAc                                                                                                        <  6:69597/147‑1 (MQ=255)                                   ccTGCCCGGCTGCCTGCAAACGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGACATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCa                                                                                                      <  4:67855/147‑1 (MQ=255)                                         cggcggCCTGCAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTgg                                                                                              >  5:125586/1‑149 (MQ=255)                                              gcCTGCAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGc                                                                                            >  6:3728/1‑146 (MQ=255)                                               ccTGCAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGTTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGa                                                                                        <  3:319867/149‑1 (MQ=255)                                                   cAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCagtctggcccaggaactggtcacggtgctgaccgaacgcattcgcagcggccagctcaa                                                                                       <  1:250067‑M1/147‑60 (MQ=255)                                                       cgcgAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCTGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTgcgcgg                                                                                >  1:219472‑M2/1‑143 (MQ=255)                                                       cgcgAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCagtctggcccaggaactggtcacggtgctgaccgaacgcattcgcagcggccagctcaagcgcgg                                                                                 <  1:272796‑M1/149‑66 (MQ=255)                                                       cgcgAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTgcgcgg                                                                                <  4:52580‑M2/149‑7 (MQ=255)                                                        gcgAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCagtctggcccaggaactggtcacggtgctgaccgaacgcattcgcagcggccagctcaagcgcggc                                                                                <  6:241787‑M1/149‑67 (MQ=255)                                                            gaTCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGc                                                                                            >  7:198945/1‑132 (MQ=255)                                                            gaTCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGc                                                                                            >  7:204314/1‑132 (MQ=255)                                                            gaTCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGc                                                                                            <  8:198945/132‑1 (MQ=255)                                                            gaTCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGc                                                                                            <  8:204314/132‑1 (MQ=255)                                                                   tCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGt                                                                    >  6:295455/1‑149 (MQ=255)                                                                           caccGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCt                                                            <  6:125586/149‑1 (MQ=255)                                                                            accGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTg                                                           <  5:295455/149‑1 (MQ=255)                                                                              cGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTa                                                         <  3:52580/149‑1 (MQ=255)                                                                               gTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTAc                                                        >  1:146434/1‑149 (MQ=255)                                                                                        aCGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTgctgct                                                <  5:3728/148‑1 (MQ=255)                                                                                            ccTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGGACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTa                                                         <  8:292181/135‑1 (MQ=255)                                                                                            ccTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTa                                                         >  7:292181/1‑135 (MQ=255)                                                                                            ccTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGt                                            >  7:287147/1‑148 (MQ=255)                                                                                            ccTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGt                                            >  6:100593/1‑148 (MQ=255)                                                                                                  cGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGc                                      <  1:107408/148‑1 (MQ=255)                                                                                                    gCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCt                                   <  5:100593/149‑1 (MQ=255)                                                                                                     ccATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTg                                  >  2:167746/1‑149 (MQ=255)                                                                                                      cATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTg                                  >  4:42075/1‑148 (MQ=255)                                                                                                       aTGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTa                                <  8:287147/149‑1 (MQ=255)                                                                                                         gATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTAt                               >  1:261673/1‑149 (MQ=255)                                                                                                         gATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTAtt                              >  5:287048/1‑149 (MQ=255)                                                                                                           tCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACctgctg                                                  <  8:200820/127‑1 (MQ=255)                                                                                                           tCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACctgctg                                                  >  7:200820/1‑127 (MQ=255)                                                                                                            cTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCt                                                            <  2:91134/116‑1 (MQ=255)                                                                                                               cGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTAttt                             <  2:146434/144‑1 (MQ=255)                                                                                                                  ttCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTg                      >  4:329945/1‑148 (MQ=255)                                                                                                                    cggtcggCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGa                    <  3:329945/148‑1 (MQ=255)                                                                                                                          gCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTc                                           >  2:253375/1‑119 (MQ=255)                                                                                                                          gCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAAACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTc                                           <  1:253375/119‑1 (MQ=255)                                                                                                                              cTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCt          >  3:200204/1‑148 (MQ=255)                                                                                                                                 gTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCtca        <  1:167746/147‑1 (MQ=255)                                                                                                                                  tCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACctgct                                                   <  8:296974/103‑1 (MQ=255)                                                                                                                                    gccgcGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTgcgcggcgacaagctgccgaccgaatcgcagatcatggccgaagagggcgtcagtcgcacggtggtgcgtgaggcgatctcgc   <  6:241787‑M2/149‑84 (MQ=255)                                                                                                                                    gccgcGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGc                                                              <  6:235749/90‑1 (MQ=255)                                                                                                                                    gccgcGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGc                                                              >  5:235749/1‑90 (MQ=255)                                                                                                                                     ccgcGCagtctggcccaggaactggtcacggtgctgaccgaacgcattcgcagcggccagctcaagcgcggcgacaagctgccgaccgaatcgcagatcatggccgaagagggcgtcagtcgcacggtggtgcgtgaggcgatctcgcg   <  4:52580‑M1/149‑144 (MQ=255)                                                                                                                                     ccgcGCagtctggcccaggaactggtcacggtgctgaccgaacgcattcgcagcggccagctcaagcgcggcgacaagctgccgacagaatcgcagatcatggccgaagagggcgtcagtcgcacggtggtgcgtgaggcgatctcgcg   >  1:219472‑M1/1‑6 (MQ=255)                                                                                                                                     ccgcGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTgcgcggcgacaagctgccgaccgaatcgcagatcatggccgaagagggcgtcagtcgcacggtggtgcgtgaggcgatctcgcg  <  1:272796‑M2/149‑85 (MQ=255)                                                                                                                                     ccgcGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCAATGCCCTg                                  <  2:132300/117‑1 (MQ=255)                                                                                                                                          |                                                                                                                                                 AGCACGAATGTACCGATGCCGTGGCGAGTCTCTACCTGCCCGGCGGCCTGCAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCG‑AATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAG  >  NC_002947/4095227‑4095507

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.