New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 414250645 (0.850)4 (0.080) 4/244 NT 8.0% coding (639/1482 nt) PP_3646 aldehyde dehydrogenase family protein
?NC_002947 = 4142532 49 (0.970)coding (665/1482 nt) PP_3646 aldehyde dehydrogenase family protein

CCTTGGCTGCCGGCAACACCATCGTGCTCAAACCGTCCGAGCACGCCTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTT  >  NC_002947/4142367‑4142652
                                                                                                                                           |                                                                                                                                                   
ccTTGGCTGCCGGCAACACCATCGTGCTCAAACCGTCCGAGCACGCCTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACcggcgcggcg                                                                                                                                            >  5:233439/1‑149 (MQ=255)
      cTGCCGGCAACACCATCGTGCTCAAACCGTCCGAGCACGCCTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCagcgggtggcgggt                                                                                                                                       >  1:7134‑M1/1‑134 (MQ=255)
            gCAACACCATCGTGCTCAAACCGTCCGAGCACGCCTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCAc                                                                                                                               >  4:74762/1‑149 (MQ=255)
                 acCATCGTGCTCAAACCGTCCGAGCAGGCCTCGGCAACCATCCTCGATCTGGCGCGACTGGCCCTTGAGGCCGGCTTCCCGGCGGGTGTGGTCAACGTGGTCAGCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCt                                                                                                                          <  1:199872/149‑1 (MQ=255)
                 acCATCGTGCTCAAACCGTCCGAGCACGCCTCGGCAACCATCCTAGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACTGCCACAGCACAGGCGCGGCGCTGACACGACACCCGCt                                                                                                                          >  2:74309/1‑149 (MQ=255)
                   cATCGTGCTCAAACCGTCCGAGCACGCCTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGc                                                                                                                                  <  4:316242/139‑1 (MQ=255)
                   cATCGTGCTCAAACCGTCCGAGCACGCCTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGc                                                                                                                                  >  3:316242/1‑139 (MQ=255)
                   cATCCTGCTCAAACCGTCCGAGCACGCCTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTgg                                                                                                                        >  2:314202‑M2/1‑147 (MQ=255)
                          cTCAAACCGTCCGAGCACGCCTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCagcgggtggcgggtcagcgccgcgccggtgctgg                                                                                                                   <  2:7134‑M1/148‑35 (MQ=255)
                           tCAAACCGTCCGAGCACGCCTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTgcgc                                                                                                                   >  4:27060/1‑146 (MQ=255)
                               aCCGTCCGAGCACGCCTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCg                                                                                                            >  3:109393/1‑149 (MQ=255)
                                ccGTCCGAGCACGCCTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGc                                                                                                           <  3:74762/149‑1 (MQ=255)
                                  gTCCGAGCACGCCTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCt                                                                                                         >  3:148359/1‑149 (MQ=255)
                                      gAGCACGCCTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCAc                                                                                                     >  8:59417/1‑149 (MQ=255)
                                            gCCTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACcggcgg                                                                                               >  5:345573/1‑149 (MQ=255)
                                            gCCTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACcggcgg                                                                                               >  7:133403/1‑149 (MQ=255)
                                            gCCTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACcggcgg                                                                                               <  4:109393/149‑1 (MQ=255)
                                             ccTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCagcgggtggcgggtcagcgccgcgccggtgct                                                                                                                     >  2:95821‑M1/1‑95 (MQ=255)
                                             ccTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCagcgggtggcgggtcagcgccgcgccggtgct                                                                                                                     <  1:95821‑M1/127‑33 (MQ=255)
                                             ccTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGt                                                                                              <  6:233439/149‑1 (MQ=255)
                                                      ccATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCAcc                                                                                     >  6:56866/1‑149 (MQ=255)
                                                                             gCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACgcagca                                                               <  3:240360/148‑1 (MQ=255)
                                                                             gCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACgcag                                                                 >  4:240360/1‑146 (MQ=255)
                                                                                cTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAgcgc                                                           <  1:74309/149‑1 (MQ=255)
                                                                                       ccGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAAc                                                    <  7:59417/149‑1 (MQ=255)
                                                                                          gCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTc                                                 <  4:148359/149‑1 (MQ=255)
                                                                                            ttCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGTCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACgcag                                                                 >  3:324114/1‑131 (MQ=255)
                                                                                            ttCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGTCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACgcag                                                                 <  4:324114/131‑1 (MQ=255)
                                                                                               ccggccggTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCaa                                            >  8:290612/1‑149 (MQ=255)
                                                                                                cggccggTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACg                                                                    <  6:199017/124‑1 (MQ=255)
                                                                                                cggccggTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACg                                                                    >  5:199017/1‑124 (MQ=255)
                                                                                                cggccggTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAg                                           <  7:290612/149‑1 (MQ=255)
                                                                                                 ggccggTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGc                                          <  5:56866/149‑1 (MQ=255)
                                                                                                  gccggTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCt                                         >  4:20961/1‑149 (MQ=255)
                                                                                                   ccggTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTg                                        <  6:345573/149‑1 (MQ=255)
                                                                                                        gtgGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCt                                   <  3:27060/149‑1 (MQ=255)
                                                                                                              aaCGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCCCCGCCCGCCACGTGGTACGCAGCCGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACt                             >  8:244796/1‑149 (MQ=255)
                                                                                                              aaCGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACt                             <  8:133403/149‑1 (MQ=255)
                                                                                                                cGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTg                                  >  1:152875/1‑142 (MQ=255)
                                                                                                                cGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTg                                  <  2:152875/142‑1 (MQ=255)
                                                                                                                     tCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGggcgg                       >  5:37518/1‑148 (MQ=255)
                                                                                                                         cGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGt                  >  7:71088/1‑149 (MQ=255)
                                                                                                                           gCTACGGCCCCAGCACCGGCGCGGCGCTGACCGCGCCACCCGATGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTc                 >  1:213223/1‑149 (MQ=255)
                                                                                                                           gCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTGCGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGggcg                        <  4:274821/141‑1 (MQ=255)
                                                                                                                           gCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTGCGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGggcg                        >  3:274821/1‑141 (MQ=255)
                                                                                                                               cGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGcc              <  8:257233/147‑1 (MQ=255)
                                                                                                                                  ccccAGCACCGGCGCGGCCCTGACCCGCCCCCCGCTGGTGCGCAAGATAGCCTTACCCCGCGGTTCCCCCCCCCCCCGCCACCTGGTACCCCGCACCCCCCAAAACATAGCCAAGCAGTGCCGGGAACAGGGCCGCAAATCGCCGAAc          >  2:152207/1‑148 (MQ=255)
                                                                                                                                   cccAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCTAAcat        <  6:37518/149‑1 (MQ=255)
                                                                                                                                    ccAGCACCGGCGCGGCGCTGACCCGCCACCCGCTggtgctggggccgtagccggtgaccacgttgaccacaccggccgggaagccggcctcaagggccagtcgggccagctcgaggatggttgccgaggcgtgctcggacggtttgag        <  2:7134‑M2/148‑115 (MQ=255)
                                                                                                                                    ccAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGGTCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAAcat        >  1:73531/1‑148 (MQ=255)
                                                                                                                                    ccAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAAcatc       <  1:152207/149‑1 (MQ=255)
                                                                                                                                      aGCACCGGCGCGGCGCTGACCCGCCACCCGCTggtgctggggccgtagccggtgaccacgttgaccacaccggccgggaagccggcctcaagggccagtcgggccagctcgaggatggttgccgagg                           >  2:95821‑M2/1‑32 (MQ=255)
                                                                                                                                      aGCACCGGCGCGGCGCTGACCCGCCACCCGCTggtgctggggccgtagccggtgaccacgttgaccacaccggccgggaagccggcctcaagggccagtcgggccagctcgaggatggttgccgagg                           <  1:95821‑M2/127‑96 (MQ=255)
                                                                                                                                         aCCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCtt  <  8:71088/149‑1 (MQ=255)
                                                                                                                                         aCCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCtt  >  1:184117/1‑149 (MQ=255)
                                                                                                                                          ccagcgggtggcgggtcagcgccgcgccggtgctggggccgtagccggtgaccacgttgaccacaccggccgggaagccggcctcaagggccagtcgggccagctcgaggatggttgccgaggcgtgctcggacggtttgagcaggatg  >  2:314202‑M1/1‑2 (MQ=255)
                                                                                                                                          ccGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCaa                    >  8:300732/1‑130 (MQ=255)
                                                                                                                                          ccGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCaa                    <  7:300732/130‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                                   
CCTTGGCTGCCGGCAACACCATCGTGCTCAAACCGTCCGAGCACGCCTCGGCAACCATCCTCGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCGGCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTACGCAGCAGCGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGCGGCAAGTCGCCGAACATCATCTT  >  NC_002947/4142367‑4142652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.