New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5129142 = | 53 (1.000) | 3 (0.060) | 3/238 | NT | 6.0% | intergenic (‑38/+114) | PP_4515/recQ | MarR family transcriptional regulator/ATP‑dependent DNA 3'‑5' helicase |
? | NC_002947 | 5129184 = | 44 (0.890) | intergenic (‑80/+72) | PP_4515/recQ | MarR family transcriptional regulator/ATP‑dependent DNA 3'‑5' helicase |
CAGGTTGAGCCCGGCCAGGCGGCGGTCCAGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCTGCATGCGTTTACAATTCGAATTCCGCCGCCAGTGCTGC > NC_002947/5129003‑5129285 | cAGGTTGAGCCCGGCCAGGCGGCGGTCCAGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCAtgcc < 8:316870/149‑1 (MQ=255) gCCCGGCCAGGCGGCGGTCCAGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTa > 1:64224/1‑149 (MQ=255) cccGGCCAGGCGGCGGTCCAGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTAc < 7:290630/149‑1 (MQ=255) ccGGCCAGGCGGCGGTCCAGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTAc > 8:135983/1‑148 (MQ=255) ggcggcGGTCCAGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAg > 2:282536/1‑149 (MQ=255) gcggcgGTCCAGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAgg > 3:144641/1‑149 (MQ=255) ggTCCAGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCgg > 1:126809/1‑149 (MQ=255) cAGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCAt < 4:144641/149‑1 (MQ=255) aGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATg > 5:78914/1‑149 (MQ=255) gCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCAtgac > 6:348968/1‑118 (MQ=255) gcgcgcagcactggcggcggaattcgaattgtaaacgcatgcaggatcgaaggcagaagcgccatctgctgacctttgtcatgctttttgacgattatcgaacgcgTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTAc > 3:295645‑M1/107‑149 (MQ=255) aCGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTAcgcg > 5:69310/1‑149 (MQ=255) cGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGt < 2:126809/149‑1 (MQ=255) ccAACCTCGGGGCATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTc > 3:191267/1‑149 (MQ=255) gggACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATc < 2:109286/148‑1 (MQ=255) gggAAATCTGGGCCAGTTGCATGCCCAAGCGGTGTTGGTTGTCGGTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATc < 6:206142/148‑1 (MQ=255) taaaTCTGGCCCAGTTGAATCCAAAAGGGGTGTTGGTTGCCGTTACGGGGAATAAGTAACTAAATGGATTTTTCCTCCTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATc < 1:282536/146‑1 (MQ=255) gACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGt > 8:132424/1‑148 (MQ=255) gACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTc < 7:135983/149‑1 (MQ=255) aTCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATc > 2:5030/1‑143 (MQ=255) aTCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATc < 1:5030/143‑1 (MQ=255) aTCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCaa > 5:35487/1‑148 (MQ=255) ggCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCa > 2:198769/1‑149 (MQ=255) ttcgaattgtaaacgcatgcaggatcgaaggcagaagcgccatctgctgacctttgtcatgctttttgacgattatcgaacgcgTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATgg > 3:216229‑M1/85‑123 (MQ=255) ttcgaattgtaaacgcatgcaggatcgaaggcagaagcgccatctgctgacctttgtcatgctttttgacgattatcgaacgcgTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATgg < 4:216229‑M1/39‑1 (MQ=255) gCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCAt < 6:69310/149‑1 (MQ=255) gCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCAt < 6:35487/149‑1 (MQ=255) gCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCAt < 1:198769/149‑1 (MQ=255) aGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCa < 7:251910/145‑1 (MQ=255) aGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCa > 8:251910/1‑145 (MQ=255) gCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGa < 8:79377/95‑1 (MQ=255) gCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGa > 7:79377/1‑95 (MQ=255) ccAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTcag < 6:54259/149‑1 (MQ=255) cAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTc > 1:215641/1‑146 (MQ=255) cAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTc < 2:215641/146‑1 (MQ=255) gtgtTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCAt < 1:132296/129‑1 (MQ=255) gtgtTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCAt > 2:132296/1‑129 (MQ=255) ttgTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTcagc < 1:69586/135‑1 (MQ=255) ttgTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTcagc > 2:69586/1‑135 (MQ=255) gTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGc > 4:163669/1‑145 (MQ=255) gTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGc < 3:163669/145‑1 (MQ=255) gTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTc > 4:225777/1‑149 (MQ=255) ggggCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATcc > 4:18693/1‑149 (MQ=255) gggCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCt < 2:64224/149‑1 (MQ=255) ggCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCTg < 6:78914/149‑1 (MQ=255) gCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCTg > 8:159209/1‑148 (MQ=255) cATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCt < 4:75054/146‑1 (MQ=255) cATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCt > 3:75054/1‑146 (MQ=255) aTAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCTGCAt < 3:18693/149‑1 (MQ=255) aTAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCTGCAt < 7:159209/149‑1 (MQ=255) aaCTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCTGCATGCGttt < 7:132424/149‑1 (MQ=255) aCTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCTGCATGCGTTTa < 3:225777/149‑1 (MQ=255) ggA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCTGCATGCGTTTACAATTc > 4:268898/1‑148 (MQ=255) gAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGa > 2:228490/1‑121 (MQ=255) t‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAg < 6:57438/92‑1 (MQ=255) tAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCTGCATGCGTTTACAATTCGAATTccgccg > 2:217390/1‑149 (MQ=255) gCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCTGCATGCGTTTACAAtt < 1:321580/127‑1 (MQ=255) gCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCTGCATGCGTTTACAATTCGAATTCCGCCGCCAGtgctgc > 5:222638/1‑149 (MQ=255) gCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCCATCCTGCATGCGTTTACAAtt > 2:321580/1‑127 (MQ=255) | CAGGTTGAGCCCGGCCAGGCGGCGGTCCAGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGTTCAGGGGCATAAGGAACTCATTGGA‑‑GTAGAT‑CTAATTATTAGGCAGCTAACCATGCCCTGCCCTACGAGGCAAGGCTCGGCCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCTGCATGCGTTTACAATTCGAATTCCGCCGCCAGTGCTGC > NC_002947/5129003‑5129285 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |