New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5200070	46 (0.870)	3 (0.060)	3/240	NT	6.0%	coding (150/522 nt)	PP_4580	hypothetical protein
	?	NC_002947	= 5200089	51 (1.020)					coding (131/522 nt)	PP_4580	hypothetical protein

GCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGCAGGTAACTTCTGAACA  >  NC_002947/5199952‑5200218                                                                                                                       |                                                                                                                                                     gcagTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTCGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAACTCGCCCATGAAAAAGCGCTCGGCCGTTTGCCGGTACCCATAGAGCGCCTcg                                                                                                                        >  1:63528/1‑149 (MQ=255)     ttCGTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGatgggttccggcaaacggccgagcgctttttcaa                                                                                                                    <  7:245875‑M1/149‑35 (MQ=255)        gTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGGGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGAtt                                                                                                                 >  7:89279/1‑149 (MQ=255)         ttGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTc                                                                                                                >  1:38216/1‑149 (MQ=255)          tGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGc                                                                                                                                             >  8:59939/1‑119 (MQ=255)          tGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGc                                                                                                                                             <  7:59939/119‑1 (MQ=255)             ggATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGaa                                                                                                             >  3:236637/1‑148 (MQ=255)                  atcaGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTc                                                                                                                <  5:242236/140‑1 (MQ=255)                  atcaGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTACGGTATTGCTGCAGCAGCCCCTGCAAATCGCCAGTTAAAAATCGATCGGCCGTTTGCCGGAAAACATCCAGCGACTCGCTCGATTAGaaaacgg                                                                                                        >  4:258100/1‑143 (MQ=255)                   tcaGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTgc                                                                                                      <  4:236637/149‑1 (MQ=255)                   tcaGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCAGCAAGTCGCCCTTGAAAAAGCGCTCGGCCCTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTAGAACAGGGgc                                                                                                      >  8:3602/1‑149 (MQ=255)                       gCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCt                                                                                                  <  8:89279/149‑1 (MQ=255)                          ttCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTAGCACAGGTGCGCCTCGa                                                                                               >  1:138929/1‑149 (MQ=255)                                      ggCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGGGGCAGCAGCGCCAGCAAGTAGCCCGTGAAAAAACGCTCGGCCGTTTGCCGGAACCCCACGAGCGCCACGCGCGATTGGAAAAGGGGCGCCTCGCCCCCCGGGcaa                                                                                    >  4:327566/1‑146 (MQ=255)                                      ggCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCta                                                                                    <  3:327566/148‑1 (MQ=255)                                       gCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCtat                                                                                   <  2:38216/148‑1 (MQ=255)                                         aTCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATAGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCCCTGGCtatat                                                                                 >  6:159573/1‑147 (MQ=255)                                               gTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTc                                                                               >  5:301952/1‑144 (MQ=255)                                               gTTGAACACCGGGTCGTCGCTGCTCCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTc                                                                               <  6:301952/144‑1 (MQ=255)                                                ttGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGAc                                                                         >  1:202516/1‑149 (MQ=255)                                                        cGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCg                                                                 >  3:60876/1‑149 (MQ=255)                                                         gggTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCgg                                                                <  1:152258/149‑1 (MQ=255)                                                            gcgtcgCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGAc                                                             <  2:63528/148‑1 (MQ=255)                                                                 gctgctGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGa                                                        <  4:60876/149‑1 (MQ=255)                                                                 gctgctGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGa                                                        >  2:143652/1‑149 (MQ=255)                                                                 gctgctGCAGCACTACCGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGa                                                        >  2:71927/1‑149 (MQ=255)                                                                   tgctgcGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATa                                                      >  4:346167/1‑149 (MQ=255)                                                                    gctgcGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAg                                                                                 >  8:175887/1‑121 (MQ=255)                                                                    gctgcGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAg                                                                                 <  7:175887/121‑1 (MQ=255)                                                                      tgcGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCg                                                   >  6:278591/1‑149 (MQ=255)                                                                        cGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGc                                                 <  1:152595/149‑1 (MQ=255)                                                                          gTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCca                                               <  3:346167/149‑1 (MQ=255)                                                                              tgctgcAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCcagcag                                           <  2:202516/149‑1 (MQ=255)                                                                                ctgcAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGatgggttccggcaaacggccgagcgctttttcaagggcgac                                                                                                             >  5:81687‑M1/1‑40 (MQ=255)                                                                                ctgcAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGatgggttccggcaaacggccgagcgctttttcaagggcgac                                                                                                             <  6:81687‑M1/81‑42 (MQ=255)                                                                                ctgcAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGc                                         <  5:159573/149‑1 (MQ=255)                                                                                     gcagcGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAg                                    <  1:143652/149‑1 (MQ=255)                                                                                            cTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGaac                              >  8:136556/1‑148 (MQ=255)                                                                                            cTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTCGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATa                                                      <  3:290724/124‑1 (MQ=255)                                                                                            cTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTAGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATa                                                      >  4:290724/1‑124 (MQ=255)                                                                                               cAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAacaaca                          <  7:136556/149‑1 (MQ=255)                                                                                               cAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAacaaca                          <  7:3602/149‑1 (MQ=255)                                                                                                aaGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAg                         >  1:170036/1‑149 (MQ=255)                                                                                                  gTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATcgagcgctttttcaagggcgacttgcaggcgctgctgcag                                                                                           <  6:81687‑M2/81‑41 (MQ=255)                                                                                                  gTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATcgagcgctttttcaagggcgacttgcaggcgctgctgcag                                                                                           >  5:81687‑M2/1‑41 (MQ=255)                                                                                                  gTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGc                        >  6:168342/1‑148 (MQ=255)                                                                                                  gTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGc                        >  2:80702/1‑148 (MQ=255)                                                                                                  gTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGc                        >  3:303948/1‑148 (MQ=255)                                                                                                       ccTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGc                  <  3:258100/149‑1 (MQ=255)                                                                                                         ttGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATcgagcgctttttcaagggcgacttgcaggcgctgctgcagcactaccgcagcagcgacgacccggtgttcaacagtgatgccaacagcatcgaaagcctgatgatccgcaacgaa                <  7:245875‑M2/149‑116 (MQ=255)                                                                                                             aaaaGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGCAGGTaa            <  7:71334/149‑1 (MQ=255)                                                                                                             aaaaGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGCAGGTaa            >  8:71334/1‑149 (MQ=255)                                                                                                                    cTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGCAGGTAACTTCTGa     <  7:114017/149‑1 (MQ=255)                                                                                                                       ggCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGCAGGTAACTTCTGAAc   <  1:80702/148‑1 (MQ=255)                                                                                                                       ggCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGCAGGTAACTTCTGAAc   <  5:168342/148‑1 (MQ=255)                                                                                                                       ggCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGCAGGTAACTTCTGAACa  >  4:200569/1‑149 (MQ=255)                                                                                                                       |                                                                                                                                                     GCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGCAGGTAACTTCTGAACA  >  NC_002947/5199952‑5200218

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.