New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5200070	46 (0.870)	3 (0.060)	3/240	NT	6.0%	coding (150/522 nt)	PP_4580	hypothetical protein
	?	NC_002947	= 5200089	51 (1.020)					coding (131/522 nt)	PP_4580	hypothetical protein

GCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGCAGGTAACTTCTGAACATGCAGCGTCCTTAGCTCT  >  NC_002947/5199952‑5200236                                                                                                                                          |                                                                                                                                                    gcagTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTCGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAACTCGCCCATGAAAAAGCGCTCGGCCGTTTGCCGGTACCCATAGAGCGCCTcg                                                                                                                                          >  1:63528/1‑149 (MQ=255)        gTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGGGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGAtt                                                                                                                                   >  7:89279/1‑149 (MQ=255)         ttGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTc                                                                                                                                  >  1:38216/1‑149 (MQ=255)             ggATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGaa                                                                                                                               >  3:236637/1‑148 (MQ=255)                  atcaGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTc                                                                                                                                  <  5:242236/140‑1 (MQ=255)                  atcaGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTACGGTATTGCTGCAGCAGCCCCTGCAAATCGCCAGTTAAAAATCGATCGGCCGTTTGCCGGAAAACATCCAGCGACTCGCTCGATTAGaaaacgg                                                                                                                          >  4:258100/1‑143 (MQ=255)                   tcaGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTgc                                                                                                                        <  4:236637/149‑1 (MQ=255)                   tcaGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCAGCAAGTCGCCCTTGAAAAAGCGCTCGGCCCTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTAGAACAGGGgc                                                                                                                        >  8:3602/1‑149 (MQ=255)                       gCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCt                                                                                                                    <  8:89279/149‑1 (MQ=255)                          ttCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTAGCACAGGTGCGCCTCGa                                                                                                                 >  1:138929/1‑149 (MQ=255)                                      ggCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGGGGCAGCAGCGCCAGCAAGTAGCCCGTGAAAAAACGCTCGGCCGTTTGCCGGAACCCCACGAGCGCCACGCGCGATTGGAAAAGGGGCGCCTCGCCCCCCGGGcaa                                                                                                      >  4:327566/1‑146 (MQ=255)                                      ggCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCta                                                                                                      <  3:327566/148‑1 (MQ=255)                                       gCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCtat                                                                                                     <  2:38216/148‑1 (MQ=255)                                         aTCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATAGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCCCTGGCtatat                                                                                                   >  6:159573/1‑147 (MQ=255)                                               gTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTc                                                                                                 >  5:301952/1‑144 (MQ=255)                                               gTTGAACACCGGGTCGTCGCTGCTCCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTc                                                                                                 <  6:301952/144‑1 (MQ=255)                                                ttGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGAc                                                                                           >  1:202516/1‑149 (MQ=255)                                                        cGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCg                                                                                   >  3:60876/1‑149 (MQ=255)                                                         gggTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCgg                                                                                  <  1:152258/149‑1 (MQ=255)                                                            gcgtcgCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGAc                                                                               <  2:63528/148‑1 (MQ=255)                                                                 gctgctGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGa                                                                          <  4:60876/149‑1 (MQ=255)                                                                 gctgctGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGa                                                                          >  2:143652/1‑149 (MQ=255)                                                                 gctgctGCAGCACTACCGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGa                                                                          >  2:71927/1‑149 (MQ=255)                                                                   tgctgcGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATa                                                                        >  4:346167/1‑149 (MQ=255)                                                                    gctgcGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAg                                                                                                   >  8:175887/1‑121 (MQ=255)                                                                    gctgcGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAg                                                                                                   <  7:175887/121‑1 (MQ=255)                                                                      tgcGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCg                                                                     >  6:278591/1‑149 (MQ=255)                                                                        cGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGc                                                                   <  1:152595/149‑1 (MQ=255)                                                                          gTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCca                                                                 <  3:346167/149‑1 (MQ=255)                                                                              tgctgcAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCcagcag                                                             <  2:202516/149‑1 (MQ=255)                                                                                ctgcAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGc                                                           <  5:159573/149‑1 (MQ=255)                                                                                     gcagcGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAg                                                      <  1:143652/149‑1 (MQ=255)                                                                                            cTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGaac                                                >  8:136556/1‑148 (MQ=255)                                                                                            cTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTCGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATa                                                                        <  3:290724/124‑1 (MQ=255)                                                                                            cTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTAGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATa                                                                        >  4:290724/1‑124 (MQ=255)                                                                                               cAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAacaaca                                            <  7:3602/149‑1 (MQ=255)                                                                                               cAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAacaaca                                            <  7:136556/149‑1 (MQ=255)                                                                                                aaGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAg                                           >  1:170036/1‑149 (MQ=255)                                                                                                  gTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATcgagcgctttttcaagggcgacttgcaggcgctgctgcag                                                                                                             >  5:81687‑M2/1‑41 (MQ=255)                                                                                                  gTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATcgagcgctttttcaagggcgacttgcaggcgctgctgcag                                                                                                             <  6:81687‑M2/81‑41 (MQ=255)                                                                                                  gTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGc                                          >  2:80702/1‑148 (MQ=255)                                                                                                  gTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGc                                          >  3:303948/1‑148 (MQ=255)                                                                                                  gTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGc                                          >  6:168342/1‑148 (MQ=255)                                                                                                       ccTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGc                                    <  3:258100/149‑1 (MQ=255)                                                                                                         ttGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATcgagcgctttttcaagggcgacttgcaggcgctgctgcagcactaccgcagcagcgacgacccggtgttcaacagtgatgccaacagcatcgaaagcctgatgatccgcaacgaa                                  <  7:245875‑M2/149‑116 (MQ=255)                                                                                                             aaaaGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGCAGGTaa                              <  7:71334/149‑1 (MQ=255)                                                                                                             aaaaGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGCAGGTaa                              >  8:71334/1‑149 (MQ=255)                                                                                                                    cTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGCAGGTAACTTCTGa                       <  7:114017/149‑1 (MQ=255)                                                                                                                       ggCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGCAGGTAACTTCTGAAc                     <  1:80702/148‑1 (MQ=255)                                                                                                                       ggCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGCAGGTAACTTCTGAAc                     <  5:168342/148‑1 (MQ=255)                                                                                                                       ggCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGCAGGTAACTTCTGAACa                    >  4:200569/1‑149 (MQ=255)                                                                                                                           gTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGCAGGTAACTTCTGAACATGCa                <  4:303948/149‑1 (MQ=255)                                                                                                                           gTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGCAGGTAACTTCTGAACATGCa                <  3:200569/149‑1 (MQ=255)                                                                                                                                ccGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTg                                                                                                          <  7:239644/54‑1 (MQ=255)                                                                                                                                ccGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTg                                                                                                          >  8:239644/1‑54 (MQ=255)                                                                                                                                         aTCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGCAGGTAACTTCTGAACATGCAGCGTCCTTAGctct  >  8:330850/1‑149 (MQ=255)                                                                                                                                          |                                                                                                                                                    GCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTAGTGCTGCAGCAGCGCCTGCAAGTCGCCCTTGAAAAAGCGCTCGGCCGTTTGCCGGAACCCATCGAGCGCCTCGCGCGATTCGAACAGGTGCGCCTCGACCCGCTGGCTATAGTCCTTGACCAGCCCCGGGACCTGGATACCGGCCAGCAGGCCGAAGGTGAACAACAGCAATCGCAGGTAACTTCTGAACATGCAGCGTCCTTAGCTCT  >  NC_002947/5199952‑5200236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.