New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5415057	49 (0.930)	4 (0.080)	4/240	NT	8.4%	coding (720/1392 nt)	gabP‑V	gamma‑aminobutyrate permease
	?	NC_002947	= 5415119	41 (0.820)					coding (658/1392 nt)	gabP‑V	gamma‑aminobutyrate permease

GCGGCGTTGGGGATGTTCATGATTTCCAGCGCACGCTGGTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGT  >  NC_002947/5414917‑5415199                                                                                                                                             |                                                                                                                                                gcggcgTTGGGGATGTTCATGATTTCCAGCGCACGCTGGTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGc                                                                                                                                         <  6:340746/149‑1 (MQ=255)       ttGGGGATGTTCATGATTTCCAGCGCACGCTGGTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGc                                                                                                                                   >  2:167718/1‑149 (MQ=255)                ttCATGATTTCCAGCGCACGCTGGTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCt                                                                                                                                       <  1:117459/136‑1 (MQ=255)                ttCATGATTTCCAGCGCACGCTGGTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCt                                                                                                                                       >  2:117459/1‑136 (MQ=255)                   aTGATTTCCAGCGCACGCTGGTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGgcagtgaccatcgccgcgtcagagtc                                                                                                                       >  8:209853‑M1/1‑123 (MQ=255)                   aTGATTTCCAGCGCACGCTGGTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGa                                                                                                                       <  6:177469/149‑1 (MQ=255)                    tGATTTCCAGCGCACGCTGGTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGAc                                                                                                                      >  6:232260/1‑149 (MQ=255)                     gATTTCCAGCGCACGCTGGTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACg                                                                                                                     >  6:274238/1‑149 (MQ=255)                       tttCCAGCGCACGCTGGTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACggg                                                                                                                   <  4:309026/149‑1 (MQ=255)                       tttCCAGCGCACGCTGGTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACggg                                                                                                                   >  4:27030/1‑149 (MQ=255)                         tCCAGCGCACGCTGGTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGt                                                                                                                  <  5:350649/148‑1 (MQ=255)                         tCCAGCGCACGCTGGTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGt                                                                                                                  <  3:27030/148‑1 (MQ=255)                           cAGCGCACGCTGGTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGc                                                                                                               <  5:274238/149‑1 (MQ=255)                              cgcACGCTGGTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACg                                                                                                                     <  1:298911/140‑1 (MQ=255)                              cgcACGCTGGTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACg                                                                                                                     >  2:298911/1‑140 (MQ=255)                                   gCTGGTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCgg                                                                                                                                              <  3:70723/110‑1 (MQ=255)                                   gCTGGTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCgg                                                                                                                                              >  4:70723/1‑110 (MQ=255)                                       gTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTg                                                                                                             <  6:174519/139‑1 (MQ=255)                                       gTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTg                                                                                                             >  5:174519/1‑139 (MQ=255)                                            aaCCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGgcagtgaccatcgccgcgtccgagtccagcgacccgtcgcgcaacatcgc                                                                                               >  7:279720‑M1/1‑98 (MQ=255)                                            aaCCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGc                                                                                                               >  3:231074/1‑132 (MQ=255)                                            aaCCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGc                                                                                                               <  4:231074/132‑1 (MQ=255)                                               ccaccaCCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGCTCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATg                                                                                          >  3:215198/1‑149 (MQ=255)                                               ccaccaCCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATg                                                                                          >  2:147312/1‑149 (MQ=255)                                                caccacCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATgg                                                                                         >  6:296488/1‑149 (MQ=255)                                                       gCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGc                                                                                  <  1:147312/149‑1 (MQ=255)                                                             tGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCctcggt                                                                            >  5:232260‑M2/1‑143 (MQ=255)                                                              gCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGa                                                                                                                                 <  3:89383/96‑1 (MQ=255)                                                              gCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGa                                                                                                                                 >  4:89383/1‑96 (MQ=255)                                                                gggTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGcc                                                                         >  2:336706/1‑149 (MQ=255)                                                                 ggTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGgcagtgaccatcgccgcgtccgagtccagcgacccgtcgcgcaacatcgccaaggccacccgctcggtgatc                                                                         <  7:209853‑M1/149‑73 (MQ=255)                                                                  gTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGgcagtgaccatcgccgcgtccgagtccagcgacccgtcgcgcaacatcgccaaggccacccgctcggtgat                                                                          <  8:279720‑M1/147‑72 (MQ=255)                                                                  gTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGa                                                                       <  1:167718/149‑1 (MQ=255)                                                                      ttCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGAACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATg                                                                     >  1:247534/1‑147 (MQ=255)                                                                         cACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACg                                                                                                                     <  3:48965/97‑1 (MQ=255)                                                                         cACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACg                                                                                                                     >  4:48965/1‑97 (MQ=255)                                                                         cACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCt                                                                >  2:253282/1‑149 (MQ=255)                                                                          aCGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTg                                                               <  1:336706/149‑1 (MQ=255)                                                                                      aaaTGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGAACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGtg                                                   <  2:247534/149‑1 (MQ=255)                                                                                         tGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAg                                                                  <  8:97122/131‑1 (MQ=255)                                                                                           aTCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCTGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGaa                                              <  4:215198/149‑1 (MQ=255)                                                                                            tCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCGAATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGaa                                              <  1:253282/149‑1 (MQ=255)                                                                                                gAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGAt                                                                      >  3:41952/1‑120 (MQ=255)                                                                                                gAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGAt                                                                      <  4:41952/120‑1 (MQ=255)                                                                                                        aCAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACt                                 >  4:294502/1‑149 (MQ=255)                                                                                                            gATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATcaca                                                      >  2:276771/1‑124 (MQ=255)                                                                                                            gATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATcaca                                                      <  1:276771/124‑1 (MQ=255)                                                                                                                 aGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAg                        >  4:145876/1‑149 (MQ=255)                                                                                                                      gTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACa                                                           >  3:322701/1‑109 (MQ=255)                                                                                                                      gTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACa                                                           <  4:322701/109‑1 (MQ=255)                                                                                                                          tGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGgc               >  7:228160/1‑149 (MQ=255)                                                                                                                           gATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGgc               >  3:347366/1‑148 (MQ=255)                                                                                                                                gCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGt                                                    >  5:305841/1‑106 (MQ=255)                                                                                                                                   aGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAAccg      <  5:296488/149‑1 (MQ=255)                                                                                                                                    gATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCctcggtgatctggcgtatcagcaccttctacatcctgtcgatcttcgtgatcatttcggtggtgccgtggaacgacc     <  7:209853‑M2/149‑78 (MQ=255)                                                                                                                                    gATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAAccgc     >  2:348676/1‑149 (MQ=255)                                                                                                                                     aTCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCctcggtgatctggcgtatcagcaccttctacatcctgtcgatcttcgtgatcatttcggtggtgccgtggaacgac      <  8:279720‑M2/147‑77 (MQ=255)                                                                                                                                       cACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCACAAAAccgccg   >  8:241956/1‑148 (MQ=255)                                                                                                                                        aCCGAGgcagtgaccatcgccgcgtccgagtccagcgacccgtcgcgcaacatcgccaaggccacccgctcggtgatctggcgtatcagcaccttctacatcctgtcgatcttcgtgatcatttcggtggtgccgtggaacgacccgca  >  5:232260‑M1/1‑6 (MQ=255)                                                                                                                                             |                                                                                                                                                GCGGCGTTGGGGATGTTCATGATTTCCAGCGCACGCTGGTACGAACCCACCACCGCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGT  >  NC_002947/5414917‑5415199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.