New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5415057	49 (0.930)	4 (0.080)	4/240	NT	8.4%	coding (720/1392 nt)	gabP‑V	gamma‑aminobutyrate permease
	?	NC_002947	= 5415119	41 (0.820)					coding (658/1392 nt)	gabP‑V	gamma‑aminobutyrate permease

GCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTCGGCCATCAGCCCGCTCAGCCCACTGACCTCGCGGTTGGGCAGCCAGTCCATCAGCGCGGCG  >  NC_002947/5414971‑5415264                                                                                                                                                      |                                                                                                                                                  gCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGc                                                                                                                                                   <  1:147312/149‑1 (MQ=255)       tGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCctcggt                                                                                                                                             >  5:232260‑M2/1‑143 (MQ=255)          gggTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGcc                                                                                                                                          >  2:336706/1‑149 (MQ=255)            gTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGa                                                                                                                                        <  1:167718/149‑1 (MQ=255)                ttCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGAACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATg                                                                                                                                      >  1:247534/1‑147 (MQ=255)                   cACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCt                                                                                                                                 >  2:253282/1‑149 (MQ=255)                    aCGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTg                                                                                                                                <  1:336706/149‑1 (MQ=255)                                aaaTGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGAACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGtg                                                                                                                    <  2:247534/149‑1 (MQ=255)                                   tGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAg                                                                                                                                   <  8:97122/131‑1 (MQ=255)                                     aTCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCTGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGaa                                                                                                               <  4:215198/149‑1 (MQ=255)                                      tCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCGAATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGaa                                                                                                               <  1:253282/149‑1 (MQ=255)                                          gAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGAt                                                                                                                                       <  4:41952/120‑1 (MQ=255)                                          gAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGAt                                                                                                                                       >  3:41952/1‑120 (MQ=255)                                                  aCAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACt                                                                                                  >  4:294502/1‑149 (MQ=255)                                                      gATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATcaca                                                                                                                       >  2:276771/1‑124 (MQ=255)                                                      gATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATcaca                                                                                                                       <  1:276771/124‑1 (MQ=255)                                                           aGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAg                                                                                         >  4:145876/1‑149 (MQ=255)                                                                gTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACa                                                                                                                            >  3:322701/1‑109 (MQ=255)                                                                gTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACa                                                                                                                            <  4:322701/109‑1 (MQ=255)                                                                    tGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGgc                                                                                >  7:228160/1‑149 (MQ=255)                                                                     gATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGgc                                                                                >  3:347366/1‑148 (MQ=255)                                                                          gCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGt                                                                                                                     >  5:305841/1‑106 (MQ=255)                                                                             aGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAAccg                                                                       <  5:296488/149‑1 (MQ=255)                                                                              gATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCctcggtgatctggcgtatcagcaccttctacatcctgtcgatcttcgtgatcatttcggtggtgccgtggaacgacc                                                                      <  7:209853‑M2/149‑78 (MQ=255)                                                                              gATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAAccgc                                                                      >  2:348676/1‑149 (MQ=255)                                                                               aTCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCctcggtgatctggcgtatcagcaccttctacatcctgtcgatcttcgtgatcatttcggtggtgccgtggaacgac                                                                       <  8:279720‑M2/147‑77 (MQ=255)                                                                                 cACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCACAAAAccgccg                                                                    >  8:241956/1‑148 (MQ=255)                                                                                          ggTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTCGGCCa                                                          <  3:145876/149‑1 (MQ=255)                                                                                                 ttGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTCGGCCATCAGccc                                                   >  1:84283/1‑149 (MQ=255)                                                                                                    gCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCctcggtgatctggcgtatcagcaccttctacatcctgtcgatcttcgtgatcatttcggtggtgccgtggaacgacccgcagctggcggtggtgggtt                                                 >  7:279720‑M2/1‑50 (MQ=255)                                                                                                        tGTTGGGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTc                                                               >  7:319665/1‑130 (MQ=255)                                                                                                        tGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTc                                                               <  8:319665/130‑1 (MQ=255)                                                                                                          ttGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTCGGCCATCAGCCCGCTCAGcc                                           <  8:228160/148‑1 (MQ=255)                                                                                                            gcgcGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGgcg                                                                               >  4:194317/1‑110 (MQ=255)                                                                                                            gcgcGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGgcg                                                                               <  3:194317/110‑1 (MQ=255)                                                                                                                gACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGAc                                                                                            >  5:336072/1‑93 (MQ=255)                                                                                                                gACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGAc                                                                                            <  6:336072/93‑1 (MQ=255)                                                                                                                      tCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTCGGCCATCAGCCCGCTCAGCCCACTGACCTcgcg                              >  7:121236/1‑149 (MQ=255)                                                                                                                      tCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTCGGCCATCAGCCCGCTCAGCCCACTGACCTcgcg                              >  7:292478/1‑149 (MQ=255)                                                                                                                      tCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTCGGCCATCAGCCCGCTCAGCCCACTGACCTcgcg                              >  3:237477/1‑149 (MQ=255)                                                                                                                        gCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCATTCGGCGCAAAACCGCCGTATTCGGCCATCAGCCCGCTCAGCCCACTGACCTCGCGGt                            >  6:110411/1‑149 (MQ=255)                                                                                                                           ggACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTCGGCCATCAGCCCGCTCAGCCCACTGACCTCGCGGTTgg                         >  2:165450/1‑149 (MQ=255)                                                                                                                            gACTCTGACGCGGCG‑ATGGTCACTGCctcggtgatctggcgtatcagcaccttctacatcctgtcgatcttcgtgatcatttcggtggtgccgtggaacgacccgcagctggcggtggtgggttcgtaccagcgtgcgctggaaatcat                        >  8:209853‑M2/1‑26 (MQ=255)                                                                                                                            gACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTCGGCCATCAGCCCGCTCAGCCCACTGACCTCGCGGTTgg                         <  8:121236/148‑1 (MQ=255)                                                                                                                               tCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTCGGCCATCAGCCCGCTCAGCCCACTGACCTcgc                               <  6:317669/139‑1 (MQ=255)                                                                                                                               tCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTCGGCCATCAGCCCGCTCAGCCCACTGACCTcgc                               >  5:317669/1‑139 (MQ=255)                                                                                                                               tCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTCGGCCATCAGCCCGCTCAGCCCACTGACCTCGCGGTTGGGCAg                     >  6:316129/1‑149 (MQ=255)                                                                                                                                  gACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTCGGCCATCAGCCCGCTCAGCCCACTGACCTCGCGGTTGGGCAGCCa                  <  3:294502/149‑1 (MQ=255)                                                                                                                                  gACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTCGGCCATCAGCCCGCTCAGCCCACTGACCTCGCGGTTGGGCAGCCa                  <  1:348676/149‑1 (MQ=255)                                                                                                                                     gcggcg‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTCGGCCATCAGCCCGCTCAGCCCACTGACCTCGCGGTTGGGCAGCCAGTc               <  4:237477/149‑1 (MQ=255)                                                                                                                                              ggTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTCGGCCATCAGCCCGCTCAGCCCACTGACCTCGCGGTTGGGCAGCCAGTCCATCAgcg       >  1:170123/1‑149 (MQ=255)                                                                                                                                                   cTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTCGGCCATCAGCCCGCTCAGCCCACTGACCTCGCGGTTGGGCAGCCAGTCCATCAGCgcggcg  <  4:347366/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                  GCCAGCTGCGGGTCGTTCCACGGCACCACCGAAATGATCACGAAGATCGACAGGATGTAGAAGGTGCTGATACGCCAGATCACCGAGCGGGTGGCCTTGGCGATGTTGCGCGACGGGTCGCTGGACTCGGACGCGGCG‑ATGGTCACTGCCTCGGTGCCGATGAAGCTGAACATCACAGTGATGAACGCACCCACCACTGCCGACCAGCCTTTCGGCGCAAAACCGCCGTATTCGGCCATCAGCCCGCTCAGCCCACTGACCTCGCGGTTGGGCAGCCAGTCCATCAGCGCGGCG  >  NC_002947/5414971‑5415264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.