| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5501667 = | 49 (0.930) | 3 (0.060) | 3/246 | NT | 5.6% | coding (60/390 nt) | PP_4835 | hypothetical protein |
| ? | NC_002947 | 5501707 = | 53 (1.040) | coding (100/390 nt) | PP_4835 | hypothetical protein | |||||
CACCTGCGTCACTTCACCGCACCCCGGCATTTTTACCTATACTCCGCCGTACAATAGCCACCACGATTCCTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGCCAACGTCGACGTTCAGGCCCTGGCCAAGATCGACCTCGGCCCGCAAAGTGACGACA > NC_002947/5501523‑5501809 | caccTGCGTCACTTCACCGCACCCCGGCATTTTTACCTATACTCCGCCGTACAATAGCCACCACGATTCCTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCa > 3:161233/1‑149 (MQ=255) tCACCGCACCCCGGCATTTTTACCTATACTCCGCCGTACAATAGCCACCACGATTCCTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGtcttc > 4:269466/1‑149 (MQ=255) cccGGCATTTTTACCTATACTCCGCCGTACAATAGCCACCACGATTCCTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGcc > 1:174438/1‑149 (MQ=255) cccGGCATTTTTACCTATACTCCGCCGTACAATAGCCACCACGATTCCTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGcc > 6:241395/1‑149 (MQ=255) ccGGCATTTTTACCTATACTCCGCCGTACAATAGCCACCACGATTCCTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGccc < 2:174438/149‑1 (MQ=255) ccGGCATTTTTACCTATACTCCGCCGTACAATAGCCACCACGATTCCTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGcc > 3:200591/1‑148 (MQ=255) ggCATTTTTACCTATACTCCGCCGTACAATAGCCACCACGATTCCTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGccc > 5:83479/1‑147 (MQ=255) ggCATTTTTACCTATACTCCGCCGTACAATAGCCACCACGATTCCTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGccc > 8:255216/1‑147 (MQ=255) aTTTTTACCTATACTCCGCCGTACAATAGCCACCACGATTCCTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAggg < 4:200591/149‑1 (MQ=255) taCTCCGCCGTACAATAGCCACCACGATTCCTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGa < 5:241395/147‑1 (MQ=255) tCCGCCGTACAATAGCCACCACGATTCCTGACCGGATCTCTCCATGCACCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGTCACGGCCGagcagc > 7:162830/1‑149 (MQ=255) cgTACAATAGCCACCACGATTCCTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGctgctg > 2:296501/1‑149 (MQ=255) cAATAGCCACCACGATTCCTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTggg > 8:53487/1‑149 (MQ=255) aaTAGCCACCACGATTCCTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTgggg < 7:251342/149‑1 (MQ=255) accacGATTCCTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTc > 1:313284/1‑149 (MQ=255) acGATTCCTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGt < 6:83479/149‑1 (MQ=255) gATTCCTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCTAGCAGCTGCTGTGGGGGGCTTTCTGTTc < 3:269466/149‑1 (MQ=255) gATTCCTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTc < 2:313284/149‑1 (MQ=255) ccTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAg > 8:146093/1‑148 (MQ=255) cTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCt > 5:49057/1‑140 (MQ=255) cTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCt < 6:49057/140‑1 (MQ=255) tGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTCCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCAt > 7:168056/1‑149 (MQ=255) aCCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATg < 3:97890/148‑1 (MQ=255) cGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACg < 8:272516/107‑1 (MQ=255) cGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACg > 7:272516/1‑107 (MQ=255) ggATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGcc > 7:320946/1‑148 (MQ=255) tctctcCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCcaac > 5:106162/1‑148 (MQ=255) ctgaacgtcgacgttggccttgttggccatgctggaacagaaagccccccacagcagctgctcGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTggg > 7:134540‑M1/64‑119 (MQ=255) ctgaacgtcgacgttggccttgttggccatgctggaacagaaagccccccacagcagctgctcGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTggg < 8:134540‑M1/56‑1 (MQ=255) tcCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGtcttc < 5:169186/80‑1 (MQ=255) tcCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAg < 2:83781/147‑1 (MQ=255) cATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGcc > 7:277147/1‑148 (MQ=255) cATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGcc > 6:275086/1‑148 (MQ=255) aacgtcgacgttggccttgttggccatgctggaacagaaagccccccacagcagctgctcGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGctgctg < 4:253278‑M1/52‑1 (MQ=255) tGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGCCAAc < 4:161233/149‑1 (MQ=255) ccccACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGCCAACGTc > 8:64584/1‑149 (MQ=255) cACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGCCAACGTCGAc < 5:275086/149‑1 (MQ=255) ggCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGc < 6:263557/106‑1 (MQ=255) ggCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGCCAACGTCGACGTTCAg < 7:255216/149‑1 (MQ=255) aTTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGCCAACGTCGACGTTCAGGCCCt > 5:20180/1‑149 (MQ=255) gCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGCCAACGTCGACGTTCAGGCCCTgg < 6:106162/148‑1 (MQ=255) gCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCAGAGCAGCTGCTGTTGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGCCAACGTCGACGTTCAGGCCCTgg < 6:20180/148‑1 (MQ=255) gATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGCCAACGTCGACGTTCAGGCCCTGGCCAAGa < 7:146093/149‑1 (MQ=255) cctgcctTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGCCAACGTCGACGTTCAg > 4:230743/1‑131 (MQ=255) cctgcctTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGCCAACGTCGACGTTCAg < 3:230743/131‑1 (MQ=255) cctgcctTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGAACGGCCGAGCAGCTGCTGTGGGGGCCTTTCTGTTCCAGCATGGCCAACAAGGCCAACGTCGACGTTCAGGCCCTGGCAAAGATCGAc > 7:238756/1‑149 (MQ=255) ctgcctTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGCCAACGTCGACGTTCAGGCCCTGGCCAAGATCGAcc < 8:277147/149‑1 (MQ=255) agcctTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGCCAACGTCGACGTTCAGGCCCTGGCCAAGATCGAcc < 1:296501/147‑1 (MQ=255) ctTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGCCAACGTCGACGTTCAGGCCCTGGCCAAGATCGAcc < 1:201949/145‑1 (MQ=255) ctTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGCCAACGTCGACGTTCAGGCCCTGGCCAAGATCGAcc > 2:201949/1‑145 (MQ=255) cTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGcc > 6:121265/1‑102 (MQ=255) cTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGcc < 5:121265/102‑1 (MQ=255) ccTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGCCAACGTCGACGTTCAGGCCCTGGCCAAGATCGAGCTCGGCCCGCAAAGTGACGACa < 7:53487/149‑1 (MQ=255) gctgGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATg < 8:182432/79‑1 (MQ=255) gctgGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATg > 7:182432/1‑79 (MQ=255) ctgGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGcc > 7:245655/1‑90 (MQ=255) ctgGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGCCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGcc < 8:245655/90‑1 (MQ=255) | CACCTGCGTCACTTCACCGCACCCCGGCATTTTTACCTATACTCCGCCGTACAATAGCCACCACGATTCCTGACCGGATCTCTCCATGCCCCCACGTCGGCACATTGCCTGGATAGCCTGCCTTGCAGTGCTGTTCAACCTGCTGGCCATGCCGCTGTCTTCTGCTGCGCCCAAGGGCACGGCCGAGCAGCTGCTGTGGGGGGCTTTCTGTTCCAGCATGGCCAACAAGGCCAACGTCGACGTTCAGGCCCTGGCCAAGATCGACCTCGGCCCGCAAAGTGACGACA > NC_002947/5501523‑5501809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |