New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5654720 =	47 (0.890)	4 (0.080)	3/246	NT	7.1%	coding (826/1059 nt)	epd	D‑erythrose 4‑phosphate dehydrogenase
	?	NC_002947	5654765 =	59 (1.150)					coding (781/1059 nt)	epd	D‑erythrose 4‑phosphate dehydrogenase

GTCGAACCAGGCCAGCAGGTTTACCAGGCGGGGGCCGGAAACACGCGTCTGGCTGGCATCGACGATCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACGAGACGTTGACGGTCGGTACACGTACCGCTTTGGCCTGGATTCGCCCGGCAAGTTCCGGAAGCAGGC  >  NC_002947/5654574‑5654866                                                                                                                                                   |                                                                                                                                                    gTCGAACCAGGCCAGCAGGTTTACCAGGCGGGGGCCGGAAACACGCGTCTGGCTGGCATCGACGATCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTc                                                                                                                                                     >  5:181390/1‑147 (MQ=255)   cGAACCAGGCCAGCAGGTTTACCAGGCGGGGGCCGGAAACACGCGTCTGGCTGGCATCGACGATCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAgc                                                                                                                                                 >  4:15708/1‑149 (MQ=255)         aGGCCAGCAGGTTTACCAGGCGGGGGGCGGAAACACGCGTCTGGCTGGCATCGACGATCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGcc                                                                                                                                           <  5:150428/149‑1 (MQ=255)                cagGTTTACCAGGCGGGGGCCGGAAACACGCGTCTGGCTGGCATCGACGATCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCgca                                                                                                                                    <  6:227777/149‑1 (MQ=255)                          aGGCGGGGGCCGGAAACACGCGTCTGGCTGGCATCGACGATCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑tt                                                                                                                         <  3:279437/149‑1 (MQ=255)                            gCGGGGGCCGGAAACACGCGTCTGGCTGGCATCGACGATCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGa                                                                                                                       <  4:29247/149‑1 (MQ=255)                             cGGGGGCCGGAAACACGCGTCTGGCTGGCATCGACGATCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGAc                                                                                                                      <  4:310530/149‑1 (MQ=255)                                   ccGGAAACACGCGTCTGGCTGGCATCGACGATCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGc                                                                                                                <  3:15708/149‑1 (MQ=255)                                    cGGAAACACGCGTCTGGCTGGCATCGACGATCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGcc                                                                                                               >  3:322150/1‑149 (MQ=255)                                          agcgcctgcttccggaacttgccgggcgaatccaggccaaagcggtacgtgtaccgaccgtcaacgtctcgtacctggacatcaccctgcagactgcccgcgacaCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTg                                                                                                         >  4:179955‑M1/106‑149 (MQ=255)                                             gcctgcttccggaacttgccgggcgaatccaggccaaagcggtacgtgtaccgaccgtcaacgtctcgtgcctggacatcaccctgcagactgcccgcgacaCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGgtg                                                                                                      >  5:78580‑M1/103‑149 (MQ=255)                                               ctgcttccggaacttgccgggcgaatccaggccaaagcggtacgtgtaccgaccgtcaacgtctcgtgcctggacatcaccctgcagactgcccgcgacaCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTg                                                                                                         >  6:69498‑M1/101‑144 (MQ=255)                                               ctgcttccggaacttgccgggcgaatccaggccaaagcggtacgtgtaccgaccgtcaacgtctcgtgcctggacatcaccctgcagactgcccgcgacaCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTg                                                                                                         <  5:69498‑M1/44‑1 (MQ=255)                                                    gctggcATCGACGATCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCggg                                                                                               >  8:265500/1‑149 (MQ=255)                                                         cATCGACGATCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTg                                                                                                         <  8:62402/134‑1 (MQ=255)                                                          aTCGACGATCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCt                                                                                         >  2:28936/1‑149 (MQ=255)                                                            cgacgaTCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCAG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTg                                                                                        >  8:299333/1‑148 (MQ=255)                                                             gacgaTCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCa                                                                                      <  4:322150/149‑1 (MQ=255)                                                              acgaTCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGGTTTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCa                                                                                      <  1:237300/149‑1 (MQ=255)                                                              acgaTCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAg                                                                                     >  7:155866/1‑149 (MQ=255)                                                                gaTCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAggg                                                                                   >  4:213699/1‑149 (MQ=255)                                                                gaTCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAggg                                                                                   >  4:165801/1‑149 (MQ=255)                                                                    gCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGAt                                                                               <  7:265500/149‑1 (MQ=255)                                                                        aaTGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTcc                                                                           <  8:155866/149‑1 (MQ=255)                                                                          tgtgGGTCATGGTTGAAATGACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCt                                                                                         <  2:17574/133‑1 (MQ=255)                                                                          tgtgGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAg                                                                         >  4:188695/1‑149 (MQ=255)                                                                          tgtgGGTCATGCTTGAAATCACACCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTAGCGCAGCACTCGG‑TTGACTTCGGACGCACTGGTGTCGCGGGCAGTCt                                                                                         >  1:17574/1‑133 (MQ=255)                                                                              ggTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGACGTCCAGGCAc                                                                     <  3:213699/149‑1 (MQ=255)                                                                                tCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCgg                                                                                                >  6:313582/1‑120 (MQ=255)                                                                                tCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCgg                                                                                                <  5:313582/120‑1 (MQ=255)                                                                                tCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCa                                                                          >  7:252498/1‑142 (MQ=255)                                                                                tCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCa                                                                          <  8:252498/142‑1 (MQ=255)                                                                                  aTGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACgaga                                                                 <  3:188695/149‑1 (MQ=255)                                                                                        gAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTGTGCAGGGTGATGTCCAGGCACGAGACGTTg                                                            <  1:28936/148‑1 (MQ=255)                                                                                         aaaTCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACGAGACGTTGAc                                                          <  7:183372/149‑1 (MQ=255)                                                                                            tCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACGAGACGTTGAcggt                                                       >  3:299340/1‑149 (MQ=255)                                                                                                     gggTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTATGCGGACCTTCCAGCGCAGCCTCGCGCATCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGGAGTCTGCAGGGTGATGTCCAGGCActa                                                                   <  2:221990/126‑3 (MQ=255)                                                                                                     gCGTGAGGCAGCTCGGTGTAAGCCAGCAAGCCTTAAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTAGG‑TTGACTTCGGCCGCACTGGTGTCGAGGGCAGTCTGCAGGGTGATGTCCAGGCACga                                                                   >  1:221990/1‑128 (MQ=255)                                                                                                       gagCGGCATCTCGGTGTAAGCCAGCAAGCCTTAAAGCGGACCATCAAGCGCAGCGTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATTGCCAGGCACGAGACGTTGACGGTCGGTacac                                               <  1:335311/144‑1 (MQ=255)                                                                                                              aGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACGAGACGTTGACGGTCGGTACACGTACCGCttt                                     >  8:241760/1‑149 (MQ=255)                                                                                                                   ggTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACGAGACGTTGACGGTCGGTACACGTACCGCTTTGGc                                  <  7:106936/147‑1 (MQ=255)                                                                                                                     tgtAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACGAGACGTTGACGGTCGGTACACGTACCGCTTTGGCCTgg                              <  7:241760/149‑1 (MQ=255)                                                                                                                         aGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACGAGACGTTGACGGTCGGTACACGTACCGCTTTGGCCTGGATTc                          >  6:339158/1‑149 (MQ=255)                                                                                                                           ccAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACGAGACGTTGACGGTCGGTACACGTACCGCTTTGGCCTGGATTCGc                        >  4:111354/1‑149 (MQ=255)                                                                                                                            cAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACGAGACGTTGACGGTCGGTACACGTACCGCTTTGGCCTGGATTCGcc                       >  6:172376/1‑149 (MQ=255)                                                                                                                            cAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCC‑CACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACGAGACGTTGACGGTCGGTACACGTACCGCTTTGGCCTGGATTCGccc                      >  8:305693/1‑149 (MQ=255)                                                                                                                            cAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCC‑CACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACGAGACGTTGACGGTCGGTACACGTACCGCTTTGGCCTGGATTCGccc                      <  7:305693/149‑1 (MQ=255)                                                                                                                                aaGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACGAGACGTTGACGGTCGGTACACGTACCGCTTTGGCCTGGATTCGCCCgg                    >  3:21396/1‑148 (MQ=255)                                                                                                                                     tttAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACGAGACGTTGACGGTCGGTACGTGTACCg                                         >  5:141120/1‑122 (MQ=255)                                                                                                                                     tttAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACGAGACGTTGACGGTCGGTACGTGTACCg                                         <  6:141120/122‑1 (MQ=255)                                                                                                                                        aaGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACGAGACGTTGACGGTCGGTACACGTACCGCTTTGGCCTGGATTCGCCCGGCAAGTTCCg           >  7:264284/1‑149 (MQ=255)                                                                                                                                          gCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACGAGACGTTGACGGTCGGTACACGTACCGCttt                                     <  4:332434/121‑1 (MQ=255)                                                                                                                                          gCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACGAGACGTTGACGGTCGGTACACGTACCGCttt                                     >  3:332434/1‑121 (MQ=255)                                                                                                                                                cTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGc                                                                       >  2:177038/1‑81 (MQ=255)                                                                                                                                                cTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGc                                                                       <  1:177038/81‑1 (MQ=255)                                                                                                                                                 ttCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACGAGACGTTGACGGTCGGTACACGTACCGCTTTGGCCTGGATTCGCCCGGCAAGTTCCGGAAGCAGgc  >  2:60937/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GTCGAACCAGGCCAGCAGGTTTACCAGGCGGGGGCCGGAAACACGCGTCTGGCTGGCATCGACGATCGCCGAATGTGGGTCATGGTTGAAATCACAGCTGGCGTGCGGCAGCTCGGTGTAAGCCAGCAAGCCTTTAAGCGGACCTTCCAGCGCAGCCTCGCGCAGCACTCGG‑TTGACTTCGGCCGCACTGGTGTCGCGGGCAGTCTGCAGGGTGATGTCCAGGCACGAGACGTTGACGGTCGGTACACGTACCGCTTTGGCCTGGATTCGCCCGGCAAGTTCCGGAAGCAGGC  >  NC_002947/5654574‑5654866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.