New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5661040	43 (0.810)	4 (0.080)	4/234	NT	8.5%	coding (665/1701 nt)	ligB	DNA ligase B
	?	NC_002947	= 5661069	46 (0.950)					coding (694/1701 nt)	ligB	DNA ligase B

TTGCAAGGTGAGCTGTATCTGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGC  >  NC_002947/5660904‑5661185                                                                                                                                         |                                                                                                                                                  ttGCAAGGTGAGCTGTATCTGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTc                                                                                                                                                  <  4:276663/138‑1 (MQ=255) ttGCAAGGTGAGCTGTATCTGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTc                                                                                                                                                  >  3:276663/1‑138 (MQ=255)        gTGAGCTGTATCTGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCAc                                                                                                                                <  3:143218/149‑1 (MQ=255)                  tCTGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAg                                                                                                                       >  6:88410/1‑148 (MQ=255)                     gcgcCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTgg                                                                                                                                            >  8:216750/1‑124 (MQ=255)                     gcgcCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTgg                                                                                                                                            <  7:216750/124‑1 (MQ=255)                      cgcCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGc                                                                                                                      <  5:24537/145‑1 (MQ=255)                         cTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggc                                                                                                               <  4:248265‑M2/149‑8 (MQ=255)                         cTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggc                                                                                                               <  5:102551‑M2/149‑8 (MQ=255)                            gACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTgctcggggccgtgcggccagccccacacgaacaggccg                                                                                                             <  4:44231‑M1/148‑39 (MQ=255)                              cGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTgctcggggccgtgcggccagccccacacgaacaggccgata                                                                                                          <  6:278117‑M1/149‑42 (MQ=255)                                aaCATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGc                                                                                                        <  5:88410/149‑1 (MQ=255)                                    tgtgCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCg                                                                                                    >  4:104767/1‑149 (MQ=255)                                      tgCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGcccc                                                                                                                          <  4:183376/125‑1 (MQ=255)                                      tgCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGcccc                                                                                                                          >  3:183376/1‑125 (MQ=255)                                           gCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCt                                                                                             <  6:102551/149‑1 (MQ=255)                                              aaGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTgg                                                                                           >  4:275402/1‑148 (MQ=255)                                                    ggcagCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGctgtccg                                                                                    >  6:262986/1‑143 (MQ=255)                                                      cagCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTgg                                                                                  <  4:278141/149‑1 (MQ=255)                                                      cagCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTgg                                                                                  <  3:104767/149‑1 (MQ=255)                                                            cAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTgg                                                                                           <  3:226670/134‑1 (MQ=255)                                                            cAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTgg                                                                                           >  4:226670/1‑134 (MQ=255)                                                             aaCGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTgctcggggccgtgcggccagccccacacgaacaggccgatagcgttgccttgt                                                                                              >  4:290243‑M1/1‑77 (MQ=255)                                                             aaCGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTgctcggggccgtgcggccagccccacacgaacaggccgatagcgttgccttgt                                                                                              <  3:290243‑M1/130‑54 (MQ=255)                                                             aaCGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTcc                                                                           >  2:140130/1‑149 (MQ=255)                                                                         aCCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTgg                                                                                  <  7:6447/130‑1 (MQ=255)                                                                         aCCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTgg                                                                                  >  8:6447/1‑130 (MQ=255)                                                                           cGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCtt                                                              >  4:265061/1‑148 (MQ=255)                                                                             tGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTAc                                                           <  1:140130/149‑1 (MQ=255)                                                                             tGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTAc                                                           <  3:275402/149‑1 (MQ=255)                                                                               gCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGACCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTCGGTTTTCCGGACAGCCAGCTTTACAg                                                         <  1:9167/149‑1 (MQ=255)                                                                                        ctCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCAt                                                <  3:265061/149‑1 (MQ=255)                                                                                                 aagcaaCTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCg                                                    <  1:114937/136‑1 (MQ=255)                                                                                                 aagcaaCTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCg                                                    >  2:114937/1‑136 (MQ=255)                                                                                                   gcaaCTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTg                                      >  6:304743/1‑148 (MQ=255)                                                                                                    caaCTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTCTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTgga                                    <  5:304743/149‑1 (MQ=255)                                                                                                        tgactgGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCAGGAGGAt                                >  7:305028/1‑149 (MQ=255)                                                                                                          actgGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGAt                                <  4:168385/147‑1 (MQ=255)                                                                                                            tgGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGAcagccagc                                                                >  2:232227/1‑113 (MQ=255)                                                                                                            tgGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGAcagccagc                                                                <  1:232227/113‑1 (MQ=255)                                                                                                            tgGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAACATc                                                     >  1:185915/1‑124 (MQ=255)                                                                                                            tgGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAACATc                                                     <  2:185915/124‑1 (MQ=255)                                                                                                                  acaAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgtt                                         <  3:290243‑M2/130‑78 (MQ=255)                                                                                                                  acaAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgtt                                         >  4:290243‑M2/1‑53 (MQ=255)                                                                                                                    aaGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTgg                    >  6:217463/1‑149 (MQ=255)                                                                                                                       gCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATg                               >  5:28431/1‑135 (MQ=255)                                                                                                                       gCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATg                               <  6:28431/135‑1 (MQ=255)                                                                                                                        cAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGcgcg                >  7:132205/1‑149 (MQ=255)                                                                                                                         aaCGCNATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGgcgc                 >  7:326220/1‑147 (MQ=255)                                                                                                                          aCGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAg              <  8:326220/149‑1 (MQ=255)                                                                                                                          aCGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAg              >  6:311786/1‑149 (MQ=255)                                                                                                                              tATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcctgccttggcttgcacatgttcg          <  6:278117‑M2/149‑109 (MQ=255)                                                                                                                                 cGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcctgccttggcttgcacatgttcgtc        <  4:44231‑M2/148‑111 (MQ=255)                                                                                                                                  ggCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGt       <  3:248265/148‑1 (MQ=255)                                                                                                                                   gCCTGTTgctcggggccgtgcggccagccccacacgaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcctgccttggcttgcacatgttcgtccag     <  5:102551‑M1/149‑143 (MQ=255)                                                                                                                                   gCCTGTTgctcggggccgtgcggccagccccacacgaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcctgccttggcttgcacatgttcgtccag     <  4:248265‑M1/149‑143 (MQ=255)                                                                                                                                   gCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTAt     >  3:312340/1‑149 (MQ=255)                                                                                                                                      tGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCgc  >  3:195535/1‑149 (MQ=255)                                                                                                                                       gTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGAca                                                                      <  3:258274/80‑1 (MQ=255)                                                                                                                                       gTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGAca                                                                      >  4:258274/1‑80 (MQ=255)                                                                                                                                         |                                                                                                                                                  TTGCAAGGTGAGCTGTATCTGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGC  >  NC_002947/5660904‑5661185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.