New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5698727 =	39 (0.740)	5 (0.110)	5/220	NT	14.1%	intergenic (+17/‑150)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	5698810 =	27 (0.590)					intergenic (+100/‑67)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein

AAGTGTCGTTCAGTGCGGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATC  >  NC_002947/5698580‑5698855                                                                                                                                                    |                                                                                                                                  tagacctcgccgggtgcgtaggtgaggctgagggtcttggaggctttgtgcaggttgatggcggtaggcaggcgggccatgggcagaatctctcgggagctgatgaagcacagcttccagcttatgggggagggattcaagggcctctt                                                                                                                                  <  3:103530‑M1/2‑1 (MQ=255) aagTGTCGTTCAGTGCGGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGttt                                                                                                                                  >  7:140888/1‑149 (MQ=255)   gtgtCGTTCAGTGCGGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTcg                                                                                                                                >  2:33014/1‑149 (MQ=255)      tCGTTCAGTGCGGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGAACTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCgg                                                                                                                             <  1:73304/149‑1 (MQ=255)        gTTCAGTGCGGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCggg                                                                                                                            >  2:206430/1‑148 (MQ=255)            aGTGCGGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGc                                                                                                                       <  7:260916/149‑1 (MQ=255)                cGGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGc                                                                                                                   <  1:206430/149‑1 (MQ=255)                 cgtaggtgaggctgagggtcttggaggctttgtgcaggttgatggcggtaggcaggcgggccatgggcagaatctctcgggagctgatgaagcacagcttccagcttatgggggagggattcaagggcctcTTCGCGGGCAAGCCcgt                                                                                                                   >  7:42381‑M1/132‑147 (MQ=255)                  ggCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCNGTTTCGACAGTTTCGCGGGCAAGCCCGCTc                                                                                                                 <  1:33014/149‑1 (MQ=255)                  ggCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCCTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTc                                                                                                                 <  7:185271/149‑1 (MQ=255)                      aCCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGCACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGATACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGc                                                                                                             <  3:267904/149‑1 (MQ=255)                             cAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACgcgc                                                                                                       >  7:332144/1‑148 (MQ=255)                                  cccATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCcaccac                                                                                                 <  4:146351/149‑1 (MQ=255)                                   ccATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCcaccac                                                                                                 >  7:56815/1‑148 (MQ=255)                                   ccATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCcaccac                                                                                                 >  4:292315/1‑148 (MQ=255)                                   ccATGACGAAGCGCCGATCCAGATAGACTCGGCGTATGTGAACAGACACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTATGTAAGACACGTTTCGACAGTTTCGCGGGCAAGCCAGCTCCTGCACGAGCcaccac                                                                                                 >  3:129158/1‑148 (MQ=255)                                          gAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTg                                                                                         >  4:78976/1‑149 (MQ=255)                                           aaGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTgg                                                                                        <  8:332144/149‑1 (MQ=255)                                             tttgtgcaggttgatggcggtaggcaggcgggccatgggcagaatctctcgggagctgatgaagcacagcttccagcttatgggggagggattcaagggcctcTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGc                                                                                      <  1:314676‑M1/46‑1 (MQ=255)                                                  gATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCtgtg                                                                                 <  8:56815/149‑1 (MQ=255)                                                  gATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCtgtg                                                                                 <  3:292315/149‑1 (MQ=255)                                                          tcgtcgCGGCGTATGTGTACAGCCACCTTGGTGAGCTGGCACAGAACGAAGACCTGTCTCGTTACATTCTGTAAGACGTGTTTCTATAGTTTCGCGTGCAAGCCCTTTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑cc                                                                         <  4:129158/148‑1 (MQ=255)                                                             aCGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGc                                                                     <  7:82107/149‑1 (MQ=255)                                                                      aggcgggccatgggcagaatctctcgggagctgatgaagcacagcttccagcttatgggggagggattcaagggcctcTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGgggcggg                                                            >  2:314676‑M1/79‑149 (MQ=255)                                                                       tgtgAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGgggcggg                                                            <  8:140888/148‑1 (MQ=255)                                                                       ggcgggccatgggcagaatctctcgggagctgatgaagcacagcttccagcttatgggggagggatgcaagggcctcTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGgggcgggc                                                           >  5:296439‑M1/78‑149 (MQ=255)                                                                           aaCAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCCAGCCCGCGGCAGCCCCCGCCCCCCCCACCCGTGGGGGGGTGGGGGT‑CCGGGGGGgggcgggggtgg                                                       >  6:317338/1‑144 (MQ=255)                                                                           aaCAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTg                                                        <  3:78976/148‑1 (MQ=255)                                                                            aCAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACTGTTTCGCGGGCAAGCCCGCTCCTGc                                                                                                             <  6:63622/95‑1 (MQ=255)                                                                            aCAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACGGTTTCGCGGGCAAGCCCGCTCCTGc                                                                                                             >  5:63622/1‑95 (MQ=255)                                                                                   gcagaatctctcgggagctgatgaagcacagcttccagcttatgggggagggattcaagggcctcTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGgggcg                                                              >  3:163044‑M1/66‑134 (MQ=255)                                                                                   gcagaatctctcgggagctgatgaagcacagcttccagcttatgggggagggattcaagggcctcTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGgggcg                                                              <  4:163044‑M1/69‑1 (MQ=255)                                                                                           aGCTGGCACAGAACGAAGACCTGTCGCGTCACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCtt                                       <  5:317338/149‑1 (MQ=255)                                                                                            gCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCAGCAGCACGCGCCACCCCCACCCGTGGGGCGGTGGGGGTACCGT‑CGGGGGCGGGCTTTGCCCCGCACAGGCCCATg                                      >  7:311073/1‑149 (MQ=255)                                                                                            gCTGGCAAATAACGAAGACCTGTCGCGTAACATTCTGTAAGCCCGGTTTCTACAGTTTCGCGGGAACCCCCGCTCCTGCACCCACCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCtt                                       <  2:109371/148‑1 (MQ=38)                                                                                                gCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGgggcgggc                                                           >  3:10110/1‑124 (MQ=255)                                                                                                gCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGgggcgggc                                                           <  4:10110/124‑1 (MQ=255)                                                                                                 cacaTAACGAAGACCTGGCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGTTCCTCCACGCGCCACCACACCCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAAtcc                                 <  3:89721/149‑1 (MQ=39)                                                                                                  acaGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCtt                                                         >  6:294955/1‑124 (MQ=255)                                                                                                  acaGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCtt                                                         <  5:294955/124‑1 (MQ=255)                                                                                                  acaGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAACCCCCGCCAGCACCCCCCCCCCCCACCCAAGGGGCGGGGGGGGT‑GAGTGCGGGGGCGGGCGTGCCCCCGACAAGGCCCCTGAAtac                                 >  4:314525/1‑146 (MQ=255)                                                                                                    aGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGgggcggg                                                            <  2:292850/119‑1 (MQ=255)                                                                                                              cgacctgcgTTACATTCTGTAAGACCGGTTTCGACTGTTTGGCGGGCAAGCCGGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTTAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGc                    <  3:244135/143‑1 (MQ=39)                                                                                                                  tCGCGTTACATGCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTg                  <  7:211737/147‑1 (MQ=255)                                                                                                                         aCATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtgt          <  5:351467/148‑1 (MQ=255)                                                                                                                         aCATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtgt          <  1:8508/148‑1 (MQ=255)                                                                                                                          ccttgtGTAAGACGGTTTTCGAGAGTTGCGCGGGCAAGCCCGCGCGTGCACGCGCCACCACACCGCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGGGGGTTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGc        <  7:200204/144‑1 (MQ=255)                                                                                                                                 tacgACCGGTTTCTCCTGTTTCGCGGGCAAGCCGGCTCCTGCCCGCGCCACCACAACCCTGGGGCCTGTGGTGAT‑CCGTGGGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtcatc  <  8:311073/145‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                  AAGTGTCGTTCAGTGCGGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATC  >  NC_002947/5698580‑5698855

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.