New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5698727 =	39 (0.740)	5 (0.110)	5/220	NT	14.1%	intergenic (+17/‑150)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	5698810 =	27 (0.590)					intergenic (+100/‑67)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein

AGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTCTA  >  NC_002947/5698670‑5698956                                                                                                                                              |                                                                                                                                                   aGCTGGCACAGAACGAAGACCTGTCGCGTCACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCtt                                                                                                                                            <  5:317338/149‑1 (MQ=255)  gCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCAGCAGCACGCGCCACCCCCACCCGTGGGGCGGTGGGGGTACCGT‑CGGGGGCGGGCTTTGCCCCGCACAGGCCCATg                                                                                                                                           >  7:311073/1‑149 (MQ=255)  gCTGGCAAATAACGAAGACCTGTCGCGTAACATTCTGTAAGCCCGGTTTCTACAGTTTCGCGGGAACCCCCGCTCCTGCACCCACCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCtt                                                                                                                                            <  2:109371/148‑1 (MQ=38)       cacaTAACGAAGACCTGGCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGTTCCTCCACGCGCCACCACACCCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAAtcc                                                                                                                                      <  3:89721/149‑1 (MQ=39)        acaGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAACCCCCGCCAGCACCCCCCCCCCCCACCCAAGGGGCGGGGGGGGT‑GAGTGCGGGGGCGGGCGTGCCCCCGACAAGGCCCCTGAAtac                                                                                                                                      >  4:314525/1‑146 (MQ=255)                    cgacctgcgTTACATTCTGTAAGACCGGTTTCGACTGTTTGGCGGGCAAGCCGGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTTAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGc                                                                                                                         <  3:244135/143‑1 (MQ=39)                        tCGCGTTACATGCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTg                                                                                                                       <  7:211737/147‑1 (MQ=255)                               aCATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtgt                                                                                                               <  5:351467/148‑1 (MQ=255)                               aCATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtgt                                                                                                               <  1:8508/148‑1 (MQ=255)                                ccttgtGTAAGACGGTTTTCGAGAGTTGCGCGGGCAAGCCCGCGCGTGCACGCGCCACCACACCGCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGGGGGTTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGc                                                                                                             <  7:200204/144‑1 (MQ=255)                                       tacgACCGGTTTCTCCTGTTTCGCGGGCAAGCCGGCTCCTGCCCGCGCCACCACAACCCTGGGGCCTGTGGTGAT‑CCGTGGGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtcatc                                                                                                       <  8:311073/145‑1 (MQ=255)                                                               GGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATgg                                                                              >  3:275842‑M1/1‑149 (MQ=255)                                                                 GCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGcc                                                                            <  4:96613‑M1/149‑1 (MQ=255)                                                                 GCAACCCCGCTCCTGCAAGCGCCACCACAACCCTTGGTACTGTGATGAT‑CCGTGCGGGGTCGGGCTTGACCGCGAAGAGCACCTTGAATCCCTCCCCCATAAGATCGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCAATGGcc                                                                            <  6:323041‑M1/149‑1 (MQ=255)                                                                      gcccgcccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGCATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCgcc                                                                        >  5:296439‑M2/73‑149 (MQ=255)                                                                      CCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTTAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCgcct                                                                       >  3:314525‑M1/1‑149 (MQ=255)                                                                       cccgcccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCgcct                                                                       >  2:314676‑M2/72‑149 (MQ=255)                                                                         cgcccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGc                                                                                    >  3:163044‑M2/70‑134 (MQ=255)                                                                         cgcccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGc                                                                                    <  4:163044‑M2/65‑1 (MQ=255)                                                                                cACGCGCCAGCACAACCCTTGGGACTGTGGTGAT‑CCGTGCGGGGGCGGGGTTGCCCTCGAAGAGGCCCTTGTATCCCTCCCCCATAAGCTGTAAGCTGTGCTTCATCAGCTCCCGATATATTCTGACCATGGCCCGCCTGCCTACCg                                                               <  5:323041/147‑1 (MQ=255)                                                                                   gcgcCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCTGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATg                                                                               <  2:230193/128‑1 (MQ=255)                                                                                   gcgcCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATg                                                                               >  1:230193/1‑128 (MQ=255)                                                                                   gcgcCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATc                                                          <  3:96613/149‑1 (MQ=255)                                                                                          cacaACCCTTGGGCCTGTGGTGAT‑CCGTGAGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGATGTGCTTCATAAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCATAACGCAATCAACCTg                                                    >  5:364670/1‑148 (MQ=255)                                                                                            caACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTa                                                                  <  5:174909/132‑1 (MQ=255)                                                                                            caACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTa                                                                  >  6:174909/1‑132 (MQ=255)                                                                                              aCCCTTGGGCCTGTGGTGAT‑CCGCGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGcaca                                                >  4:103530/1‑148 (MQ=255)                                                                                               cccTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGcc                                                             <  4:201264/134‑1 (MQ=255)                                                                                               cccTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAAcc                                                      >  6:298669/1‑141 (MQ=255)                                                                                               cccTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAAcc                                                      <  5:298669/141‑1 (MQ=255)                                                                                                gcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACaaa                                              <  1:314676‑M2/103‑1 (MQ=255)                                                                                                           tggtgAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGAcc                                  >  1:150707/1‑149 (MQ=255)                                                                                                             gtgAT‑CCGTGCGGGGGGGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCt                                <  3:264038/149‑1 (MQ=255)                                                                                                             gtgAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCAt                                                                                                                             >  6:89818/1‑56 (MQ=255)                                                                                                             gggAT‑CCGGGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCt                                <  6:364670/147‑1 (MQ=255)                                                                                                                aT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAg                             >  2:92410/1‑149 (MQ=255)                                                                                                                        cGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCa                                                         <  3:185504/114‑1 (MQ=255)                                                                                                                        cGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACAGCCATCa                                                         >  4:185504/1‑114 (MQ=255)                                                                                                                             acgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACg                  >  7:42381‑M2/18‑148 (MQ=255)                                                                                                                                            aaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTCTa  <  3:103530‑M2/147‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                   AGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAT‑CCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTCTA  >  NC_002947/5698670‑5698956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.