New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5964109 =	43 (0.810)	3 (0.060)	3/240	NT	7.8%	coding (199/900 nt)	xerC	tyrosine recombinase XerC
	?	NC_002947	5964147 =	30 (0.600)					coding (237/900 nt)	xerC	tyrosine recombinase XerC

GTCGGAGCACACCTCGCAGGGCTACCGTCGCGACCTGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAGGTACTGGATACCGACCGCG  >  NC_002947/5963964‑5964256                                                                                                                                                  |                                                                                                                                                    gtcgtcgtcgacgccaccatcgagcagctgcagtgcgcggtcggtatccagtaccttgggcagccgccgctcacctttgggcgcgctcaggccgttggccgggtcgtgctggcacaggccttcgcggttgaggtagcggtacaggCcgc                                                                                                                                                  >  8:220520‑M1/146‑149 (MQ=255)         acacCTCGCAGGGCTACCGTCGCGACCTGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTg                                                                                                                                          <  6:123862/149‑1 (MQ=255)         acacCTCGCAGGGCTACCGTCGCGACCTGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTg                                                                                                                                          <  6:9866/149‑1 (MQ=255)          cacCTCGCAGGGCTACCGTCGCGACCTGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTgg                                                                                                                                         >  5:116236/1‑149 (MQ=255)           acCTCGCAGGGCTACCGTCGCGACCTGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTgg                                                                                                                                         >  1:62576/1‑148 (MQ=255)           acCTCGCAGGGCTACCGTCGCGACCTGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTgg                                                                                                                                         >  2:339373/1‑148 (MQ=255)             cTCGCAGGGCTACCGTCGCGACCTGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCAc                                                                                                                                      >  2:69863/1‑149 (MQ=255)              tCGCAGGGCTACCGTCGCGACCTGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACg                                                                                                                                     >  3:23805/1‑149 (MQ=255)                gCAGGGCTTCCGTCGCGACCTGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCAc                                                                                                                                      <  4:23805/146‑1 (MQ=255)                gCAGGGCTACCGTCGCGACCTGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCcgc                                                                                                                                                  <  1:36875/134‑1 (MQ=255)                gCAGGGCTACCGTCGCGACCTGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCcgc                                                                                                                                                  >  2:36875/1‑134 (MQ=255)                gCAGGGCTACCGTCGCGACCTGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGcc                                                                                                                                   <  5:224958/149‑1 (MQ=255)                 cAGGGCTACCGTCGAGACCTGGAAAAAGTCATCGCCTAGTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAGATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTTCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCct                                                                                                                                  <  2:278676/149‑1 (MQ=255)                    ggCTACCGTCGCGACCTGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCgcgc                                                                                                                                                >  2:297695/1‑132 (MQ=255)                    ggCTACCGTCGCGACCTGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCctgct                                                                                                                               <  2:62576/149‑1 (MQ=255)                        gcagctgcagtgcgcggtcggtatccagtaccttgggcagccgccgctcacctttgggcgcgctcaggccgttggccgggtcgtgctggcacaggccttcgcggttgaggtagcggtacaggCcgc                                                                                                                                                  >  8:188465‑M1/123‑126 (MQ=255)                        gcagctgcagtgcgcggtcggtatccagtaccttgggcagccgccgctcacctttgggcgcgctcaggccgttggccgggtcgtgctggcacaggccttcgcggttgaggtagcggtacaggCcgc                                                                                                                                                  <  7:188465‑M1/4‑1 (MQ=255)                        aCCGTCGCGACCTGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCg                                                                                                                           >  2:275640/1‑149 (MQ=255)                                  tgcgcggtcggtatccagtaccttgggcagccgccgctcacctttgggcgcgctcaggccgttggccgggtcgtgctggcacaggccttcgcggttgaggtagcggtacaggCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGcgcg                                                                                                                 >  6:119060‑M1/113‑149 (MQ=255)                                   cTGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCgg                                                                                                                >  8:230438/1‑149 (MQ=255)                                    tGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGc                                                                                                               >  7:163079/1‑149 (MQ=255)                                         aaaGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTa                                                                                                          <  7:230438/149‑1 (MQ=255)                                         aaaGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTa                                                                                                          >  3:289794/1‑149 (MQ=255)                                          aaGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGc                                                                                                                                             <  5:45466/113‑1 (MQ=255)                                          aaGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGc                                                                                                                                             >  6:45466/1‑113 (MQ=255)                                          aaGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTAc                                                                                                         <  8:163079/149‑1 (MQ=255)                                             tCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGTGCGGCCTGTACCGc                                                                                                      >  3:164957/1‑149 (MQ=255)                                                tCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTAc                                                                                                   <  1:275640/149‑1 (MQ=255)                                                tCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTAc                                                                                                   <  1:339373/149‑1 (MQ=255)                                                      aCTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCctg                                                                                                                                 <  1:41606/113‑1 (MQ=255)                                                      aCTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCctg                                                                                                                                 >  2:41606/1‑113 (MQ=255)                                                            aagaaCACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGaa                                                                                       <  6:116236/149‑1 (MQ=255)                                                                 cacGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGTGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCt                                                                                  <  4:164957/149‑1 (MQ=255)                                                                 cacGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGc                                                                                    >  8:215280/1‑147 (MQ=255)                                                                 cacGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGc                                                                                    <  7:215280/147‑1 (MQ=255)                                                                 cacGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCt                                                                                  <  4:289794/149‑1 (MQ=255)                                                                 cacGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCt                                                                                  <  8:160386/149‑1 (MQ=255)                                                                     gctcacctttgggcgcgctcaggccgttggccgggtcgtgctggcacaggccttcgcggttgaggtagcggtacaggCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCgg                                                                                                                >  3:312090‑M1/78‑115 (MQ=255)                                                                     gctcacctttgggcgcgctcaggccgttggccgggtcgtgctggcacaggccttcgcggttgaggtagcggtacaggCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCgg                                                                                                                <  4:312090‑M1/38‑1 (MQ=255)                                                                         tGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAg                                                                           >  5:137698/1‑148 (MQ=255)                                                                            cGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACg                                                                       >  4:276445/1‑149 (MQ=255)                                                                             gATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGa                                                                      <  7:25492/149‑1 (MQ=255)                                                                                  gCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCgg                                                                 >  5:11789/1‑149 (MQ=255)                                                                                      gcgcTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCaa                                                             <  8:11278/149‑1 (MQ=255)                                                                                                      agcTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGcc                                              >  2:28357/1‑148 (MQ=255)                                                                                                              cAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGa                                     <  1:28357/149‑1 (MQ=255)                                                                                                               aGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAg                                    >  1:214796/1‑149 (MQ=255)                                                                                                                               gCACCACCATGGCCAATCTCCCCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCTAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAg                     <  6:250302/148‑1 (MQ=255)                                                                                                                                   caccaTGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGc                                                                                    <  2:112568/81‑1 (MQ=255)                                                                                                                                          gCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAGGTACTGGATacc         <  6:137698/149‑1 (MQ=255)                                                                                                                                            cAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCTGCCAGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCAAGACCCGGCCAACGCCCTGAGCGCTCCCAAAGGTGAGCGGCGGCTGCCCAACGTACTGGATaccga       >  1:27947/1‑149 (MQ=255)                                                                                                                                             aaTCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAGGTACTGGATaccgac      >  6:183809/1‑149 (MQ=255)                                                                                                                                                 tcCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAGGTACTGGATACCGACcgcg  >  2:348083/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GTCGGAGCACACCTCGCAGGGCTACCGTCGCGACCTGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAGGTACTGGATACCGACCGCG  >  NC_002947/5963964‑5964256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.