New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5964109 =	43 (0.810)	3 (0.060)	3/240	NT	7.8%	coding (199/900 nt)	xerC	tyrosine recombinase XerC
	?	NC_002947	5964147 =	30 (0.600)					coding (237/900 nt)	xerC	tyrosine recombinase XerC

TGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAGGTACTGGATACCGACCGCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGAC  >  NC_002947/5963999‑5964291                                                                                                                                                     |                                                                                                                                                 tGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGc                                                                                                                                                  >  7:163079/1‑149 (MQ=255)      aaaGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTa                                                                                                                                             <  7:230438/149‑1 (MQ=255)      aaaGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTa                                                                                                                                             >  3:289794/1‑149 (MQ=255)       aaGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTAc                                                                                                                                            <  8:163079/149‑1 (MQ=255)          tCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGTGCGGCCTGTACCGc                                                                                                                                         >  3:164957/1‑149 (MQ=255)             tCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTAc                                                                                                                                      <  1:275640/149‑1 (MQ=255)             tCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTAc                                                                                                                                      <  1:339373/149‑1 (MQ=255)                         aagaaCACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGaa                                                                                                                          <  6:116236/149‑1 (MQ=255)                              cacGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGTGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCt                                                                                                                     <  4:164957/149‑1 (MQ=255)                              cacGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGc                                                                                                                       <  7:215280/147‑1 (MQ=255)                              cacGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGc                                                                                                                       >  8:215280/1‑147 (MQ=255)                              cacGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCt                                                                                                                     <  4:289794/149‑1 (MQ=255)                              cacGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCt                                                                                                                     <  8:160386/149‑1 (MQ=255)                                      tGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAg                                                                                                              >  5:137698/1‑148 (MQ=255)                                         cGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACg                                                                                                          >  4:276445/1‑149 (MQ=255)                                          gATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGa                                                                                                         <  7:25492/149‑1 (MQ=255)                                               gCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCgg                                                                                                    >  5:11789/1‑149 (MQ=255)                                                   gcgcTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCaa                                                                                                <  8:11278/149‑1 (MQ=255)                                                                   agcTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGcc                                                                                 >  2:28357/1‑148 (MQ=255)                                                                           cAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGa                                                                        <  1:28357/149‑1 (MQ=255)                                                                            aGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAg                                                                       >  1:214796/1‑149 (MQ=255)                                                                                            gCACCACCATGGCCAATCTCCCCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCTAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAg                                                        <  6:250302/148‑1 (MQ=255)                                                                                                caccaTGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGc                                                                                                                       <  2:112568/81‑1 (MQ=255)                                                                                                       gCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAGGTACTGGATacc                                            <  6:137698/149‑1 (MQ=255)                                                                                                         cAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCTGCCAGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCAAGACCCGGCCAACGCCCTGAGCGCTCCCAAAGGTGAGCGGCGGCTGCCCAACGTACTGGATaccga                                          >  1:27947/1‑149 (MQ=255)                                                                                                          aaTCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAGGTACTGGATaccgac                                         >  6:183809/1‑149 (MQ=255)                                                                                                              tcCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAGGTACTGGATACCGACcgcg                                     >  2:348083/1‑149 (MQ=255)                                                                                                               ccgcgcactgccgacagcaggcgtgccaggctgcgcggCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAgc                                                                      >  3:312090‑M2/39‑115 (MQ=255)                                                                                                               ccgcgcactgccgacagcaggcgtgccaggctgcgcggCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAgc                                                                      <  4:312090‑M2/77‑1 (MQ=255)                                                                                                                cgcgcactgccgacagcaggcgtgccaggctgcgcggCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAGGTACTGGATACCGACCGCGCa                                   >  6:119060‑M2/38‑149 (MQ=255)                                                                                                                CGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAGGTACTGGATACCGACCGCGCa                                   <  4:86832‑M1/149‑1 (MQ=255)                                                                                                                          ggCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAGGTACTGGATACCGACCGCGCACTGCAgctgc                         <  3:276445/149‑1 (MQ=255)                                                                                                                            cACGCCTGCTGTCGGGAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCATCTGCCTGAGCGCGCCCAACGGTGAGCGGCGGCTGCCCAAGGTACTGGATACCGACCGCTCACTGCAGCTGCTc                       <  2:27947/149‑1 (MQ=255)                                                                                                                                       tCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAGGTACTGGATACCGACCGCGCACTGCa                              <  1:24385/131‑1 (MQ=255)                                                                                                                                       tCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAGGTACTGGATACCGACCGCGCACTGCa                              >  2:24385/1‑131 (MQ=255)                                                                                                                                         ggCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAGGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAg                                                                                       <  2:33727/72‑1 (MQ=255)                                                                                                                                         ggCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAGGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAg                                                                                       >  1:33727/1‑72 (MQ=255)                                                                                                                                          gCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAGGTACTGGATACCGACCGCGCACTGCAGCTGCTCGATGGTGGCGTcga         >  7:329151/1‑149 (MQ=255)                                                                                                                                                 gcggCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAGGTACTGGATACCGACCGCGCACTGCAgctgc                         <  7:188465‑M2/122‑1 (MQ=255)                                                                                                                                                 gcggCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAGGTACTGGATACCGACCGCGCACTGCAgctgc                         >  8:188465‑M2/5‑126 (MQ=255)                                                                                                                                                 gcggCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAGGTACTGGATACCGACCGCGCACTGCAGCTGCTCGATGGTGGCGTCgacgacgac  >  8:220520‑M2/5‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                 TGGAAAAAGTCATCGCCTACTGCGAAGAACACGGCATTGCCGATTGGCAGGCGCTGCAAATCCAGCAGCTGCGCCAGCTGATCGCCCGCTTGCACCACCATGGCCAATCTCCGCGCAGCCTGGCACGCCTGCTGTCGGCAGTGCGCGGCCTGTACCGCTACCTCAACCGCGAAGGCCTGTGCCAGCACGACCCGGCCAACGGCCTGAGCGCGCCCAAAGGTGAGCGGCGGCTGCCCAAGGTACTGGATACCGACCGCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGAC  >  NC_002947/5963999‑5964291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.