New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6007918 =	45 (0.850)	3 (0.060)	3/248	NT	6.5%	coding (204/1389 nt)	norM	multidrug resistance protein NorM
	?	NC_002947	6007956 =	43 (0.830)					coding (242/1389 nt)	norM	multidrug resistance protein NorM

CCTCGCAGTTGGCGCACATGCTGATGGTGCTGACCGACACCCTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGTGCTGCTGCT  >  NC_002947/6007776‑6008061                                                                                                                                               |                                                                                                                                                ccTCGCAGTTGGCGCACATGCTGATGGTGCTGACCGACACCCTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCgg                                                                                                                                            >  5:153442/1‑148 (MQ=255) ccTCGCAGTTGGCGCACATGCTGATGGTGCTGACCGACACCCTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCgg                                                                                                                                            <  5:193328/148‑1 (MQ=255)  cTCGCAGTTGGCGCACATGCTGATGGTGCTGACCGACACCCTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCa                                                                                                                                          <  6:55182/149‑1 (MQ=255)                     cTGATGGTGCTGACCGACACCCTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCaa                                                                                                                       <  3:97176/149‑1 (MQ=255)                       gATGGTGCTGACCGACCCCCTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAgg                                                                                                                     >  6:292691/1‑149 (MQ=255)                         tGGTGCTGACCGACACCCTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGt                                                                                                                   <  1:132497/149‑1 (MQ=255)                          ggTGCTGACCGACACCCTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGt                                                                                                                   >  3:88103/1‑148 (MQ=255)                          ggTGCTGACCGACACCCTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGt                                                                                                                   <  4:88103/148‑1 (MQ=255)                            tGCTGACCGACACCCTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTc                                                                                                                           <  4:143379/138‑1 (MQ=255)                            tGCTGACCGACACCCTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTc                                                                                                                           >  3:143379/1‑138 (MQ=255)                            tGCTGACCGACACCCTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGcc                                                                                                                <  6:153442/149‑1 (MQ=255)                             gCTGACCGACACCCTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGcc                                                                                                                >  3:289356/1‑148 (MQ=255)                                gACCGACACCCTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAAc                                                                                                             >  4:190874/1‑148 (MQ=255)                                 gaaaagcagcagcacaggttcaagattccacagcaccagcgcagcgaacagcgccaaggcccaggccagccacaggccgttctgcgccagtcgggtggcgccttcgatgtCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGa                                                                                                           >  2:191472‑M1/111‑149 (MQ=255)                                        cccTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGaa                                                                                                    <  8:266578/149‑1 (MQ=255)                                         ccTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAg                                                                                                   >  4:324259/1‑149 (MQ=255)                                                 tgGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCAcc                                                                                           >  2:23881/1‑149 (MQ=255)                                                    cccGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGaa                                                                                                    >  4:41190/1‑137 (MQ=255)                                                    cccGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGaa                                                                                                    <  3:41190/137‑1 (MQ=255)                                                     ccGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTc                                                                                                                           >  3:291278/1‑113 (MQ=255)                                                     ccGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTc                                                                                                                           <  4:291278/113‑1 (MQ=255)                                                     ccGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGAc                                                                                       >  8:128010/1‑149 (MQ=255)                                                         aTCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGgc                                                                                   <  3:190874/149‑1 (MQ=255)                                                         aTCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGgc                                                                                   <  4:289356/149‑1 (MQ=255)                                                              acagcaccagcgcagcgaacagcgccaaggcccaggccagccacaggccgttctgcgccagtcgggtggcgccttcgatgtCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAgg                                                                                                  >  2:219230‑M1/82‑129 (MQ=255)                                                              acagcaccagcgcagcgaacagcgccaaggcccaggccagccacaggccgttctgcgccagtcgggtggcgccttcgatgtCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAgg                                                                                                  <  1:219230‑M1/48‑1 (MQ=255)                                                                   aGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACg                                                                           <  1:23881/147‑1 (MQ=255)                                                                              ggtggtGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGtggctggc                                                              <  7:128010/149‑1 (MQ=255)                                                                                  gtggCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTgg                                                          <  3:324259/149‑1 (MQ=255)                                                                                  gtggCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTgg                                                          >  5:144485/1‑149 (MQ=255)                                                                                  gtggCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTgg                                                          >  2:66699/1‑149 (MQ=255)                                                                                       cTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCtt                                                     >  4:137842/1‑149 (MQ=255)                                                                                         gggggCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTgg                                                   >  3:248627/1‑149 (MQ=255)                                                                                                   agcTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTcgc                                         >  1:327876/1‑149 (MQ=255)                                                                                                   agcTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTcgc                                         >  7:251616/1‑149 (MQ=255)                                                                                                    gcTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTcgct                                        >  2:232942/1‑149 (MQ=255)                                                                                                                tATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCtg                            >  6:311804/1‑149 (MQ=255)                                                                                                                 aTCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTgg                                                          >  4:78664/1‑118 (MQ=255)                                                                                                                 aTCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTgg                                                          <  3:78664/118‑1 (MQ=255)                                                                                                                 aTCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCtgt                           >  2:69250/1‑149 (MQ=255)                                                                                                                 aTCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCtgt                           >  1:71217/1‑149 (MQ=255)                                                                                                                  tCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCtgt                           <  1:69250/148‑1 (MQ=255)                                                                                                                     aTCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGaa                       >  2:206329/1‑149 (MQ=255)                                                                                                                            gCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGaa                >  8:271967/1‑149 (MQ=255)                                                                                                                             ccTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGa                 <  5:311804/147‑1 (MQ=255)                                                                                                                                  gCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCtgtg          <  1:232942/149‑1 (MQ=255)                                                                                                                                   cGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGtgc         <  5:292691/149‑1 (MQ=255)                                                                                                                                       aTCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGtgctgct     <  4:248627/149‑1 (MQ=255)                                                                                                                                          gccgccGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGtgctgctgc   <  3:137842/148‑1 (MQ=255)                                                                                                                                          gccgccGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGTgctgctgct  >  8:221360/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                CCTCGCAGTTGGCGCACATGCTGATGGTGCTGACCGACACCCTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGTGCTGCTGCT  >  NC_002947/6007776‑6008061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.