New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6007918 =	45 (0.850)	3 (0.060)	3/248	NT	6.5%	coding (204/1389 nt)	norM	multidrug resistance protein NorM
	?	NC_002947	6007956 =	43 (0.830)					coding (242/1389 nt)	norM	multidrug resistance protein NorM

ACCGACACCCTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGTGCTGCTGCTTTTCGGGCAGAAGCCCGAGAACGTGGCCTCGGCCGCCGAATTT  >  NC_002947/6007808‑6008104                                                                                                                                                     |                                                                                                                                                     gaaaagcagcagcacaggttcaagattccacagcaccagcgcagcgaacagcgccaaggcccaggccagccacaggccgttctgcgccagtcgggtggcgccttcgatgtCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGa                                                                                                                                                      >  2:191472‑M1/111‑149 (MQ=255)        cccTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGaa                                                                                                                                               <  8:266578/149‑1 (MQ=255)         ccTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAg                                                                                                                                              >  4:324259/1‑149 (MQ=255)                 tgGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCAcc                                                                                                                                      >  2:23881/1‑149 (MQ=255)                    cccGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGaa                                                                                                                                               <  3:41190/137‑1 (MQ=255)                    cccGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGaa                                                                                                                                               >  4:41190/1‑137 (MQ=255)                     ccGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGAc                                                                                                                                  >  8:128010/1‑149 (MQ=255)                         aTCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGgc                                                                                                                              <  3:190874/149‑1 (MQ=255)                         aTCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGgc                                                                                                                              <  4:289356/149‑1 (MQ=255)                              acagcaccagcgcagcgaacagcgccaaggcccaggccagccacaggccgttctgcgccagtcgggtggcgccttcgatgtCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAgg                                                                                                                                             <  1:219230‑M1/48‑1 (MQ=255)                              acagcaccagcgcagcgaacagcgccaaggcccaggccagccacaggccgttctgcgccagtcgggtggcgccttcgatgtCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAgg                                                                                                                                             >  2:219230‑M1/82‑129 (MQ=255)                                   aGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACg                                                                                                                      <  1:23881/147‑1 (MQ=255)                                              ggtggtGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGtggctggc                                                                                                         <  7:128010/149‑1 (MQ=255)                                                  gtggCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTgg                                                                                                     >  5:144485/1‑149 (MQ=255)                                                  gtggCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTgg                                                                                                     <  3:324259/149‑1 (MQ=255)                                                  gtggCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTgg                                                                                                     >  2:66699/1‑149 (MQ=255)                                                       cTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCtt                                                                                                >  4:137842/1‑149 (MQ=255)                                                         gggggCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTgg                                                                                              >  3:248627/1‑149 (MQ=255)                                                                   agcTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTcgc                                                                                    >  1:327876/1‑149 (MQ=255)                                                                   agcTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTcgc                                                                                    >  7:251616/1‑149 (MQ=255)                                                                    gcTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTcgct                                                                                   >  2:232942/1‑149 (MQ=255)                                                                                tATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCtg                                                                       >  6:311804/1‑149 (MQ=255)                                                                                 aTCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTgg                                                                                                     >  4:78664/1‑118 (MQ=255)                                                                                 aTCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTgg                                                                                                     <  3:78664/118‑1 (MQ=255)                                                                                 aTCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCtgt                                                                      >  2:69250/1‑149 (MQ=255)                                                                                 aTCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCtgt                                                                      >  1:71217/1‑149 (MQ=255)                                                                                  tCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCtgt                                                                      <  1:69250/148‑1 (MQ=255)                                                                                     aTCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGaa                                                                  >  2:206329/1‑149 (MQ=255)                                                                                            gCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGaa                                                           >  8:271967/1‑149 (MQ=255)                                                                                             ccTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGa                                                            <  5:311804/147‑1 (MQ=255)                                                                                                  gCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCtgtg                                                     <  1:232942/149‑1 (MQ=255)                                                                                                   cGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGtgc                                                    <  5:292691/149‑1 (MQ=255)                                                                                                     ccttcgatgtcgttggcacccttgcgaatggccaccagcgtgccgacgACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCtgt                                                                      <  1:219230‑M2/81‑1 (MQ=255)                                                                                                     ccttcgatgtcgttggcacccttgcgaatggccaccagcgtgccgacgACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCtgt                                                                      >  2:219230‑M2/49‑129 (MQ=255)                                                                                                       aTCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGtgctgct                                                <  4:248627/149‑1 (MQ=255)                                                                                                          gccgccGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGtgctgctgc                                              <  3:137842/148‑1 (MQ=255)                                                                                                          gccgccGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGTgctgctgct                                             >  8:221360/1‑149 (MQ=255)                                                                                                              tcgttggcacccttgcgaatggccaccagcgtgccgacgACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGTGCTGCTGCTTTTc                                         >  2:191472‑M2/40‑149 (MQ=255)                                                                                                                 TCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGTGCTGCTGCTTTTCggg                                      >  2:71217‑M1/1‑149 (MQ=255)                                                                                                                     cACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGtgc                                                    >  6:244809/1‑131 (MQ=255)                                                                                                                     cACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGtgc                                                    <  5:244809/131‑1 (MQ=255)                                                                                                                                 cATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGTGCTGCTGCTTTTCggg                                      >  7:55421/1‑133 (MQ=255)                                                                                                                                 cATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGTGCTGCTGCTTTTCggg                                      <  8:55421/133‑1 (MQ=255)                                                                                                                                 cATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGTGCTGCTGCTTTTCGGGc                                     >  8:47221/1‑134 (MQ=255)                                                                                                                                 cATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGTGCTGCTGCTTTTCGGGCAGAAGCCCGAGAACg                      >  6:62949/1‑149 (MQ=255)                                                                                                                                 cATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTGGAACCTGTGCTGCTGCTTTTCGGGc                                     <  7:47221/134‑1 (MQ=255)                                                                                                                                   ttCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGTGCTGCTGCTTTTCGGGCAGAAGCCCGAGAACGTg                    <  6:144485/149‑1 (MQ=255)                                                                                                                                   ttCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGTGCTGCTGCTTTTCGGGCAGAAGCCCGAGAACGTg                    <  1:206329/149‑1 (MQ=255)                                                                                                                                      gCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGTGCTGCTGCTTTTCGGGCAGAAGCCCGAGAACGTGGcc                 >  8:23791/1‑149 (MQ=255)                                                                                                                                      gCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGTGCTGCTGCTTTTCGGGCAGAAGCCCGAGAACGTGGcc                 >  8:279537/1‑149 (MQ=255)                                                                                                                                                     aCATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGTGCTGCTGCTTTTCGGGCAGAAGCCCGAGAACGTGGCCTCGGCCGCCGAAttt  <  2:327876/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     ACCGACACCCTGATGATGGCCCGCATCAGCCCTCAGGCTTTGGCGGGTGGTGGCCTGGGGGCAGCCAGCTATTCGTTCGTATCGATCTTCTGCCTGGGCGTGATCGCCGCCGTCGGCACGCTGGTGGCCATTCGCAAGGGTGCCAACGACATCGAAGGCGCCACCCGACTGGCGCAGAACGGCCTGTGGCTGGCCTGGGCCTTGGCGCTGTTCGCTGCGCTGGTGCTGTGGAATCTTGAACCTGTGCTGCTGCTTTTCGGGCAGAAGCCCGAGAACGTGGCCTCGGCCGCCGAATTT  >  NC_002947/6007808‑6008104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.