New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 80502	46 (0.870)	3 (0.060)	3/238	NT	6.2%	coding (117/558 nt)	tsaC	threonylcarbamoyl‑AMP synthase
	?	NC_002947	= 80527	47 (0.950)					coding (142/558 nt)	tsaC	threonylcarbamoyl‑AMP synthase

ACAGCAATGGTGAGCAGTTTTCGTGTGCAACAAGCCGCACGTGAGATCCGGGCGGGCGCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGAGCAGCACCTGGCCGGGGCCGAACACCTGGCTGGTGCCGCAT  >  NC_002947/80380‑80667                                                                                                                                                    |                                                                                                                                              aCAGCAATGGTGAGCAGTTTTCGTGTGCAACAAGCCGCACGTGAGATCCGGGCGGGCGCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTc                                                                                                                                              >  8:69492‑M2/1‑148 (MQ=255) aCAGCAATGGTGAGCAGTTTTCGTGTGCAACAAGCCGCACGTGAGATCCGGGCGGGCGCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTc                                                                                                                                              <  4:316687‑M2/149‑2 (MQ=255)   aGCAATGGTGAGCAGTTTTCGTGTGCAACAAGCCGCACGTGAGATCCGGGCGGGCGCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTcgc                                                                                                                                            <  7:154227‑M2/149‑4 (MQ=255)   aGCAATGGTGAGCAGTTTTCGTGTGCAACAAGCCGCACGTGAGATCCGGGCGGGCGCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTcgc                                                                                                                                            <  2:127271‑M2/149‑4 (MQ=255)   aGCAATGGTGAGCAGTTTTCGTGTGCAACAAGCCGCACGTGAGATCCGGGCGGGCGCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTcgc                                                                                                                                            >  2:156787‑M2/1‑146 (MQ=255)    gCAATGGTGAGCAGTTTTCGTGTGCAACAAGCCGCACGTGAGATCCGGGCGGGCGCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTcgcg                                                                                                                                           <  5:215811‑M2/149‑5 (MQ=255)             aGCAGTTTTCGTGTGCAACAAGCCGCACGTGAGATCCGGGCGGGCGCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGa                                                                                                                                  <  3:316687/149‑1 (MQ=255)                aGTTTTCGTGTGCAACAAGCCGCACGTGAGATCCGGGCGGGCGCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATa                                                                                                                                >  4:83496/1‑148 (MQ=255)                           gCAACAAGCCGCACGTGAGATCCGGGCGGGCGCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTc                                                                                                                    >  3:285446/1‑149 (MQ=255)                            caacaaGCCGCACGTGAGATCCGGGCGGGCGCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTc                                                                                                                    <  1:127271/148‑1 (MQ=255)                             aacaaGCCGCACGTGAGATCCGGGCGGGCGCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCt                                                                                                                   >  2:181259/1‑148 (MQ=255)                             aacaaGCCGCACGTGAGATCCGGGCGGGCGCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCATGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCt                                                                                                                   >  3:85885/1‑148 (MQ=255)                                             gaTCCGGGCGGGCGCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCATGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑Tcc                                                                                                 <  4:85885/149‑1 (MQ=255)                                               tCCGGGCGGGCGCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGt                                                                                               <  5:249866/149‑1 (MQ=255)                                                   ggcgggcgCTGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAat                                                                                                      >  4:102316/1‑139 (MQ=255)                                                   ggcgggcgCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAat                                                                                                      <  3:102316/139‑1 (MQ=255)                                                     cgggcgCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTc                                                                                         <  4:140601/149‑1 (MQ=255)                                                     cgggcgCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTc                                                                                         <  3:83496/149‑1 (MQ=255)                                                       ggcgCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGa                                                                                       <  8:154227/149‑1 (MQ=255)                                                        gcgcGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGa                                                                                       <  4:159238/148‑1 (MQ=255)                                                        gcgcGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGa                                                                                       >  3:159238/1‑148 (MQ=255)                                                           cgGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGATGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGAATCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTc                                                                                   >  1:104005/1‑149 (MQ=255)                                                                aTCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTc                                                                                   >  4:174748/1‑144 (MQ=255)                                                                aTCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTc                                                                                   <  3:174748/144‑1 (MQ=255)                                                                    ccTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAg                                                                          <  4:285446/149‑1 (MQ=255)                                                                     cTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATACTCCGTCAGTTCGACTTCCTGTTCGAg                                                                          <  1:181259/149‑1 (MQ=255)                                                                         ccGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTc                                                                                   <  7:227569/135‑1 (MQ=255)                                                                         ccGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTc                                                                                   >  8:227569/1‑135 (MQ=255)                                                                         ccGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACtt                                                                     >  1:183203/1‑149 (MQ=255)                                                                         ccGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACtt                                                                     >  6:208978/1‑149 (MQ=255)                                                                         ccGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGCAACGAGGACTCGGTGTATCGCCTGTAGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCAGTCAGTTAGACTTCCTCTTCGAGGACtt                                                                     >  7:301638/1‑149 (MQ=255)                                                                             cGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTcccc                                                                 <  2:183203/149‑1 (MQ=255)                                                                                    ggTCTGGGGCCTGGGCTGCGACCGATGGTACGAGGTCGCGGTGTATCGCCTGTTGGCGCTGAAGTCGGGTCCTGTGGATAAAGGGGTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCGCCGAGGACt                                                          <  2:104005/149‑1 (MQ=255)                                                                                            gCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGAc                                                  >  8:61341/1‑149 (MQ=255)                                                                                             ccTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTc                                                                             >  5:125966/1‑121 (MQ=255)                                                                                             ccTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTc                                                                             <  6:125966/121‑1 (MQ=255)                                                                                             ccTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGAcc                                                 <  5:75391/149‑1 (MQ=255)                                                                                             ccTGGGCTGCGACCCATGGAACGAGGACGAGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGAcc                                                 <  5:70342/149‑1 (MQ=255)                                                                                               tGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCg                                                >  2:236504/1‑148 (MQ=255)                                                                                                 ggCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCTACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCAt                                             <  5:208978/149‑1 (MQ=255)                                                                                                 ggCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGc                                               <  6:215811/147‑1 (MQ=255)                                                                                                      cGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGagc                                         <  3:292522/148‑1 (MQ=255)                                                                                                       gACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGagcag                                       <  8:224569/149‑1 (MQ=255)                                                                                                            aTGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTcc                                                                   <  4:216640/116‑1 (MQ=255)                                                                                                               gAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGAGCAGCACCTGGc                               >  1:60680/1‑149 (MQ=255)                                                                                                                   gAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTcgcgtcctcgttccatgggtcgcagcccaggccccagaccgcttccgtcgggtaggcg                                                                                     >  5:209172‑M2/1‑34 (MQ=255)                                                                                                                   gAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTcgcgtcctcgttccatgggtcgcagcccaggccccagaccgcttccgtcgggtaggcg                                                                                     <  6:209172‑M2/92‑59 (MQ=255)                                                                                                                   gAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGAGCAGCACCTGGCCggg                           <  3:151663/149‑1 (MQ=255)                                                                                                                    aGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTcgcgtcctcgttccatgggtcgcagcccaggccccagaccgcttccgtcgggtaggcgatcaccgcgcccgcccggatctcacgtgcggcttgttgcacacgaaaactgctcacca                           <  2:72840‑M2/149‑117 (MQ=255)                                                                                                                    aGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGAGCAGCACCTGGCCgggg                          <  1:236504/149‑1 (MQ=255)                                                                                                                     ggACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCAGAGGACTGGATCGACCGCATGAGCAGCACCTGGCCGGGGc                         >  8:114371/1‑149 (MQ=255)                                                                                                                       aCGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGAGCAGCACCTGGCCggg                           >  2:62591/1‑145 (MQ=255)                                                                                                                       aCGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGAGCAGCACCTGGCCggg                           <  1:62591/145‑1 (MQ=255)                                                                                                                                 tCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGAGCAGCACCTGGCCGGGGCCGAACACct                >  7:248956/1‑146 (MQ=255)                                                                                                                                 tCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGAGCAGCACCTGGCCGGGGCCGAACACct                <  8:248956/146‑1 (MQ=255)                                                                                                                                        ttGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGAGCAGCACCTGGCCGGGGCCGAACACCTGGCTGGTGc       <  2:20572/148‑1 (MQ=255)                                                                                                                                             gcTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGAGCAGCACCTGGCCGGGGCCGAACACCTGGCTGGTGCCGCAt  >  2:349540/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                              ACAGCAATGGTGAGCAGTTTTCGTGTGCAACAAGCCGCACGTGAGATCCGGGCGGGCGCGGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACCCATGGAACGAGGACGCGGTGTATCGCCTGTTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATA‑TCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGAGCAGCACCTGGCCGGGGCCGAACACCTGGCTGGTGCCGCAT  >  NC_002947/80380‑80667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.