New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	375996 =	50 (0.950)	5 (0.100)	3/236	NT	10.7%	coding (43/771 nt)	PP_0313	electron transfer flavoprotein subunit beta
	?	NC_002947	376052 =	37 (0.750)					coding (99/771 nt)	PP_0313	electron transfer flavoprotein subunit beta

GACAACTACCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGACCACCTCGACGTGCTGGAGCAACCGGCCGGGGCCGATGTGCTGGGCGTGCT  >  NC_002947/375905‑376192                                                                                                                                                     |                                                                                                                                             gtccaggcccatgcccaggtaagcgcgcaaggcctcttcctgtggattgcccgcatgcaccacctgcaagttatccccagccagctgcaaaCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGt                                                                                                                                              >  6:78998‑M1/92‑148 (MQ=255) gtccaggcccatgcccaggtaagcgcgcaaggcctcttcctgtggattgcccgcatgcaccacctgcaagttatccccagccagctgcaaaCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGt                                                                                                                                              >  5:215443‑M1/92‑148 (MQ=255)        aCCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAgct                                                                                                                                      >  5:119203/1‑149 (MQ=255)         ccatgcccaggtaagcgcgcaaggcctcttcctgtggattgcccgcatgcaccacctgcaagttatccccagccagctgcaaaCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGt                                                                                                                                              >  6:354563‑M1/84‑140 (MQ=255)         ccatgcccaggtaagcgcgcaaggcctcttcctgtggattgcccgcatgcaccacctgcaagttatccccagccagctgcaaaCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGt                                                                                                                                              <  5:354563‑M1/57‑1 (MQ=255)              gCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGctggctgg                                                                                                                                <  2:123681/149‑1 (MQ=255)              gCGGCAGCCAGCGCGACGCGGCATAAGCGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTGCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGATCAGT‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGctggctgg                                                                                                                                <  7:270631/149‑1 (MQ=255)                 gCAGCCTGCGCGACGCGGCATATGGGCACTAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCGGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGa                                                                                                                             <  4:249274/149‑1 (MQ=255)                 gCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGa                                                                                                                             >  2:221718/1‑149 (MQ=255)                 gCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGa                                                                                                                             >  3:220943/1‑149 (MQ=255)                     ccagcGCGACGCGGCAAAAGGGCACGAGCATGAGTACGAAAGTGATAAGCCTGGTTTCCATTGGTGCCCACCCCAGAACCGGCCGCCCCCGCCGCGCCGACCAGG‑ATGCACGTCCCGTGGAGCTGGGTTTGCAGCTGGAGGGGGAAAAc                                                                                                                         >  8:49506/1‑149 (MQ=255)                       agcGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACtt                                                                                                                       >  6:270739/1‑149 (MQ=255)                           cgACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAg                                                                                                                   <  1:221718/149‑1 (MQ=255)                               gcgGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAggtgg                                                                                                               <  3:31533/149‑1 (MQ=255)                                       aGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAgct                                                                                                                                      >  6:132577/1‑118 (MQ=255)                                        gggCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCgg                                                                                                      <  5:270739/149‑1 (MQ=255)                                         ggCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCggg                                                                                                     <  6:119203/149‑1 (MQ=255)                                          gCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGGCTTGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCggg                                                                                                     <  1:278038/149‑1 (MQ=255)                                          gCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTg                                                                                                                      >  3:60463/1‑131 (MQ=255)                                          gCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTg                                                                                                                      <  4:60463/131‑1 (MQ=255)                                             cGAGCATGAGTCCGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTATGCAGCTGGCTGGGGATAACTTTCAGGTGGTGCATGCGGGCAAt                                                                                                 >  8:272524/1‑149 (MQ=255)                                             cGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAGCTTGCAGGTGGTGCATGCGGGCAAt                                                                                                 >  2:9338/1‑149 (MQ=255)                                                gCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGctggctgg                                                                                                                                >  1:21689/1‑115 (MQ=255)                                                gCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGctggctgg                                                                                                                                <  2:21689/115‑1 (MQ=255)                                                  aTGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCGCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCcaca                                                                                            <  4:220943/149‑1 (MQ=255)                                                    gAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGAGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAg                                                                                           >  3:214877/1‑148 (MQ=255)                                                          gtaaGTGTTCAGGCTGGTTTCCATTGGTGCCCACGCCAGCTCCGGGCGCGCCCGGCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGTATGCGGGCAATCCACAGGAagag                                                                                     <  7:49506/146‑1 (MQ=255)                                                          gAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAgg                                                                                    >  6:219899/1‑149 (MQ=255)                                                           aaaGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCTGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGc                                                                                   <  2:91174/149‑1 (MQ=255)                                                             aGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCt                                                                                 <  6:145251/149‑1 (MQ=255)                                                                            ttCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCt                                                                                 >  8:243894/1‑134 (MQ=255)                                                                            ttCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCt                                                                                 <  7:243894/134‑1 (MQ=255)                                                                               cATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCATGCGCGCTTACCTGGGc                                                                <  1:9338/148‑1 (MQ=255)                                                                                aTTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCAt                                                              >  6:276422/1‑149 (MQ=255)                                                                                       cccACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTg                                                       >  2:287049/1‑149 (MQ=255)                                                                                          aCCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGac                                                    >  3:154522/1‑149 (MQ=255)                                                                                            acccagctccacggcacgggcatcctgctcggcgcggcgggcgcggccggagctgggTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATgg                                                            >  6:354563‑M2/58‑140 (MQ=255)                                                                                            acccagctccacggcacgggcatcctgctcggcgcggcgggcgcggccggagctgggTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATgg                                                            <  5:354563‑M2/83‑1 (MQ=255)                                                                                            acccagctccacggcacgggcatcctgctcggcgcggcgggcgcggccggagctgggTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGac                                                    >  6:78998‑M2/58‑148 (MQ=255)                                                                                            acccagctccacggcacgggcatcctgctcggcgcggcgggcgcggccggagctgggTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGac                                                    >  5:215443‑M2/58‑148 (MQ=255)                                                                                             CCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGaccac                                                 >  4:214877‑M1/1‑149 (MQ=255)                                                                                                GCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGACCACCTc                                              >  5:219899‑M1/1‑149 (MQ=255)                                                                                                GCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGACCACCTc                                              >  5:276422‑M1/1‑149 (MQ=255)                                                                                                     cacggcacgggcatcctgctcggcgcggcgggcgcggccggagctgggTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGACCACCTCGAc                                           <  6:215443‑M2/100‑1 (MQ=255)                                                                                                            cccgccGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGACCACCTCGACGTGCTGGAg                                  >  7:112741/1‑149 (MQ=255)                                                                                                               gccgcgccgAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGACCACCTCGACGTGCTGGAGCaa                               <  8:112741/149‑1 (MQ=255)                                                                                                                                  cccGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGACCACCTCGACGTGCTGGAGCAACCGGCCGGGGCCGAt                >  7:191938/1‑146 (MQ=255)                                                                                                                                  cccGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGACCACCTCGACGTGCTGGAGCAACCGGCCGGGGCCGAt                <  8:191938/146‑1 (MQ=255)                                                                                                                                   ccgtgccgtgGAGCTGGGTTTGCAGCTGGATGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGACCACCTCGACGTGCTGGAGCAACCGGCCGGGGCCGATgtgc            >  1:250042/1‑149 (MQ=255)                                                                                                                                       gccgtgGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTg                                                       <  1:277476/102‑1 (MQ=255)                                                                                                                                       gccgtgGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTg                                                       >  2:277476/1‑102 (MQ=255)                                                                                                                                           tgGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGACCACCTCGACGTGCTGGAGCAACCGGCCGGGGCCGATgtgctgggcgtg    <  4:154522/149‑1 (MQ=255)                                                                                                                                             gagctgggTTTGCTGCTGGGTGGGGATATCTTGCAGGTGGTGGATGCGGGCATTCCACAGGAAGTGGCCTTGCGCGCTTAACTGGGCATGGGCCTGGACCACCTCGACGTGCTGGAGCAAGCGGCCGGGGCCGATgtgctgggcgtgct  <  8:281645‑M2/141‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                             GACAACTACCGCAGCGGCAGCCAGCGCGACGCGGCATAAGGGCACGAGCATGAGTACGAAAGTGATCAGCCTGGTTTCCATTGGTGCCCACCCCAGCTCCGGCCGCGCCCGCCGCGCCGAGCAGG‑ATGCCCGTGCCGTGGAGCTGGGTTTGCAGCTGGCTGGGGATAACTTGCAGGTGGTGCATGCGGGCAATCCACAGGAAGAGGCCTTGCGCGCTTACCTGGGCATGGGCCTGGACCACCTCGACGTGCTGGAGCAACCGGCCGGGGCCGATGTGCTGGGCGTGCT  >  NC_002947/375905‑376192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.