New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 731541	49 (0.930)	4 (0.080)	4/242	NT	7.4%	coding (1081/2565 nt)	clpB	chaperone protein ClpB
	?	NC_002947	= 731561	53 (1.050)					coding (1101/2565 nt)	clpB	chaperone protein ClpB

TCGAAAAGGACGCCGCCCTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACTCCAAGCCGGAAGTGCTCGACCGC  >  NC_002947/731428‑731702                                                                                                                                      |                                                                                                                                              tCGAAAAGGACGCCGCCCTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCt                                                                                                                                >  7:230656/1‑149 (MQ=255)    aaaaGGACGCCGCCCTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGCAGCCACCATCGCCATCCTGCGTGGCCGGAAAGCGCGCTATGAAGTGCACCACAAGGTGGCCATCCCCGACGGTGCACTCATCGCTGCg                                                                                                                             >  5:174254/1‑149 (MQ=255)    aaaaGGACGCCGCCCTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCg                                                                                                                             >  6:193938/1‑149 (MQ=255)    aaaaGGACGCCGCCCTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCg                                                                                                                             >  7:64226/1‑149 (MQ=255)       aGGACGCCGCCCTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGcc                                                                                                                          <  8:230656/149‑1 (MQ=255)            gccgccCTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCt                                                                                                                     >  4:266500/1‑149 (MQ=255)            gccgccCTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCt                                                                                                                     >  4:122970/1‑149 (MQ=255)              cgccCTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCa                                                                                                                   <  3:122970/149‑1 (MQ=255)                     gAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCAt                                                                                                              <  3:266500/147‑1 (MQ=255)                                gcAGAATGGGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTTCGTGGCCTGAAAGAGCTCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCTGCCAAGCTCAGCCATCTCTACATCacc                                                                                                  <  2:287020/147‑1 (MQ=255)                                ccAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAg                                                                                                                       >  8:226129/1‑127 (MQ=255)                                 cAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCaccga                                                                                                >  5:288018/1‑149 (MQ=255)                                     aGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCaccgaccg                                                                                             <  2:207935/148‑1 (MQ=255)                                           tGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTg                                                                                      >  7:176346/1‑149 (MQ=255)                                                      ccGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGAc                                                                                <  8:318477/144‑1 (MQ=255)                                                      ccGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGAc                                                                                >  7:318477/1‑144 (MQ=255)                                                      ccGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGc                                                                           <  6:288018/149‑1 (MQ=255)                                                        gagcgagGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGTACCACAAGGTGGCCATCACCGACggtgca                                                                                                                                         <  3:38796‑M2/85‑7 (MQ=255)                                                        gagcgagGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGTACCACAAGGTGGCCATCACCGACggtgca                                                                                                                                         >  4:38796‑M2/1‑79 (MQ=255)                                                        gagcgagGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCa                                                                         >  7:74866/1‑149 (MQ=255)                                                        gagcgagGAAGACACCATCGCAATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCAATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCCCCGACCGCCAGCTGCCGTACAAGGCCa                                                                         >  2:63652/1‑149 (MQ=255)                                                          gcgagGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCGATCGc                                                                                                           >  4:140097/1‑113 (MQ=255)                                                          gcgagGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGc                                                                                                           <  3:140097/113‑1 (MQ=255)                                                             agGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGAc                                                                    <  8:176346/149‑1 (MQ=255)                                                                 aGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGGGGCCATCACCGACTGTTCAATCATCGCTGCGGCCAAGCTCAGCGATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGa                                                                <  1:63652/149‑1 (MQ=255)                                                                  gACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCac                                                                                                   <  6:333911/113‑1 (MQ=255)                                                                  gACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCac                                                                                                   >  5:333911/1‑113 (MQ=255)                                                                  gACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCg                                                                                   >  4:7869/1‑129 (MQ=255)                                                                  gACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCg                                                                                   <  3:7869/129‑1 (MQ=255)                                                                     acCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATcga                                                            <  8:64226/149‑1 (MQ=255)                                                                     acCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATcga                                                            >  5:206082/1‑149 (MQ=255)                                                                        aTCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGAc                                                                                >  8:115276/1‑126 (MQ=255)                                                                        aTCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGAc                                                                                <  7:115276/126‑1 (MQ=255)                                                                         tCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGaa                                                        <  6:206082/149‑1 (MQ=255)                                                                                 cTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGCCCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAg                                                >  6:90105/1‑149 (MQ=255)                                                                                          cTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGccgcatccg                                       >  5:50346/1‑149 (MQ=255)                                                                                           tGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGccgcatccg                                       >  3:82984/1‑148 (MQ=255)                                                                                             caaGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGccgcat                                          <  4:46415/142‑1 (MQ=255)                                                                                             aaaGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGccgcatccgc                                      <  5:193938/147‑1 (MQ=255)                                                                                             aaaGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCAACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGCCCAGccgcatcagatc                                    >  3:46415/1‑144 (MQ=255)                                                                                                gagCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGga                                 <  6:199509/149‑1 (MQ=255)                                                                                                  gcgcTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGgaga                               <  6:50346/149‑1 (MQ=255)                                                                                                    gcTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATg                                   >  2:45011/1‑143 (MQ=255)                                                                                                    gcTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCACTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATg                                   >  5:312250/1‑143 (MQ=255)                                                                                                      tATGAAGTGCACCACAAGGTGGCCATCACCGACggtgcacttcatagcgctctttcaggccacgcaggatggcgatggtgtcttcctcgctcggctcctcgaccagcaccttctggaaacggcgctccagggcggcgtccttttcgat                            <  5:122478‑M2/148‑116 (MQ=255)                                                                                                      tATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGAcc                                                                   >  4:255780/1‑109 (MQ=255)                                                                                                        tGAAGTGCACCACAAGGTGGCCATCACCGACggtgcacttcatagcgctctttcaggccacgcaggatggcgatggtgtcttcctcgctcggctcctcgaccagcaccttctggaaacggcgctccagggcggcgtccttttcgatg                           >  6:122478‑M2/1‑31 (MQ=255)                                                                                                        tGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGAc                          <  5:90105/148‑1 (MQ=255)                                                                                                          aaGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACTc                        >  6:199569/1‑148 (MQ=255)                                                                                                            gTGCACCACAAGGTGGCCATCACCGACggtgcacttcatagcgctctttcaggccacgcaggatggcgatggtgtcttcctcgctcggctcctcgaccagcaccttctggaaacggcgctccagggcgg                                         <  4:102785‑M2/129‑103 (MQ=255)                                                                                                            gTGCACCACAAGGTGGCCATCACCGACggtgcacttcatagcgctctttcaggccacgcaggatggcgatggtgtcttcctcgctcggctcctcgaccagcaccttctggaaacggcgctccagggcgg                                         >  3:102785‑M2/1‑27 (MQ=255)                                                                                                               caccacAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACTCCAAGcc                  >  6:285870/1‑149 (MQ=255)                                                                                                                  cacaAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACTCCAAGCCgg                >  7:196571/1‑148 (MQ=255)                                                                                                                  cacaAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACTCCAAGCCgg                >  5:65107/1‑148 (MQ=255)                                                                                                                   acaAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACTCCAAGCCGGaa              <  5:285870/149‑1 (MQ=255)                                                                                                                       ggTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACTCCAAGCCGGAAGTGc          >  3:252833/1‑149 (MQ=255)                                                                                                                             cATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACTCCAAGCCGGAAGTGCTCGAcc    >  1:11443/1‑149 (MQ=255)                                                                                                                             cATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACTCCAAGCCGGAAGTGCTCGAcc    <  3:209850/149‑1 (MQ=255)                                                                                                                               tCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAACCGCATCCGCATGGAGATCGACTCCAAGCCGGAAGTGCTCGACCGc  <  1:139712/149‑1 (MQ=255)                                                                                                                                      |                                                                                                                                              TCGAAAAGGACGCCGCCCTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACTCCAAGCCGGAAGTGCTCGACCGC  >  NC_002947/731428‑731702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.