New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 806683	46 (0.870)	3 (0.060)	3/240	NT	6.6%	coding (647/2832 nt)	PP_0693	hypothetical protein
	?	NC_002947	= 806709	42 (0.840)					coding (621/2832 nt)	PP_0693	hypothetical protein

GCCACGCCACCGGCCAGGGCCTCGACCAACGGGCCGGCAGCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAGGCTTTGCTCGCTGGTGGAACGCAGCGGGATCATGGTCAGGTCCAGCGGCACCGAAGTGT  >  NC_002947/806566‑806854                                                                                                                                                 |                                                                                                                                                  gccacgccacCGGCCAGGGCCTCGACCAACGGGCCGGCAGCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGgcgtc                                                                                                                                              <  2:308037‑M2/149‑6 (MQ=255)  ccacgccacCGGCCAGGGCCTCGACCAACGGGCCGGCAGCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGgcgtc                                                                                                                                              <  6:111651‑M2/148‑6 (MQ=255)   cacgccacCGGCCAGGGCCTCGACCAACGGGCCGGCAGCGACCAGGGCGTTGTAGACCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGgcgtcga                                                                                                                                            >  5:10369‑M2/1‑142 (MQ=255)    acgccacCGGCCAGGGCCTCGACCAACGGGCCGGCAGCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAg                                                                                                                                           >  2:99863/1‑149 (MQ=255)     cgccacCGGCCAGGGCCTCGACCAACGGGCCGGCAGCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAgg                                                                                                                                          <  1:308037/149‑1 (MQ=255)        cacCGGCCAGGGCCTCGACCAACGGGCCGGCAGCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGaa                                                                                                                                        >  1:56141/1‑148 (MQ=255)        cacCGGCCAGGGCCTCGACCAACGGGCCGGCAGCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGaa                                                                                                                                        >  8:100923/1‑148 (MQ=255)           cGGCCAGGGCCTCGACCAACGGGCCGGCAGCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGt                                                                                                                                    <  8:230132/149‑1 (MQ=255)                aGGGCCTCGACCAACGGGCCGGCAGCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCtt                                                                                                                               <  1:99863/149‑1 (MQ=255)                      tCGACCAACGGGCCGGCAGCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCtt                                                                                                                         >  6:104342/1‑149 (MQ=255)                         aCCAACGGGCCGGCAGCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGgcgtcga                                                                                                                                            >  5:101181‑M2/1‑120 (MQ=255)                         aCCAACGGGCCGGCAGCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGgcgtcga                                                                                                                                            <  6:101181‑M2/127‑8 (MQ=255)                         aCCAACGGGCCGGCAGCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTggc                                                                                                                      <  8:60529/149‑1 (MQ=255)                           cAACGGGCCGGCAGCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCGAAGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGc                                                                                                                                 <  1:63241/137‑1 (MQ=255)                           cAACGGGCCGGCAGCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGc                                                                                                                                 >  2:63241/1‑136 (MQ=255)                             aCGGGCCGGCAGCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGgcggcg                                                                                                                  <  5:45064/149‑1 (MQ=255)                               gggCCGGCAGCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGt                                                                                                                >  1:214382/1‑149 (MQ=255)                                       aGCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCAc                                                                                                        <  5:104342/149‑1 (MQ=255)                                        gCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACg                                                                                                       >  3:168936/1‑149 (MQ=255)                                         cGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACg                                                                                                       >  2:130393/1‑148 (MQ=255)                                              aGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCAtgtg                                                                                                 <  7:100923/149‑1 (MQ=255)                                                         gTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGAtct                                                                                                           >  7:19271/1‑128 (MQ=255)                                                         gTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGAtct                                                                                                           <  8:19271/128‑1 (MQ=255)                                                              gCTCCATGCGGCGTACGTGGCGGAAGGCTTCCTCGCACGCAGCTATGTAGTCGACGCTGCCCG‑TGCGCAGGCTGTGCTCTAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTGACGc                                                                                                      <  5:225062/128‑1 (MQ=255)                                                                  cATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAgcg                                                                             >  8:66202/1‑149 (MQ=255)                                                                  cATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTCCATGAGCTTGGCGGCGGTCATCTCACGCAAGTGCAGCAGGTTGATGAACAgcg                                                                             >  2:338197/1‑149 (MQ=255)                                                                          gTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGaaa                                                                     <  8:231422/149‑1 (MQ=255)                                                                          gTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGaaa                                                                     <  5:111651/149‑1 (MQ=255)                                                                                 gcgGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCa                                                              <  1:130393/149‑1 (MQ=255)                                                                                 gcgGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCa                                                              <  2:56141/149‑1 (MQ=255)                                                                                  cgGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAg                                                             <  2:49317/149‑1 (MQ=255)                                                                                   ggAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAgg                                                            >  1:216685/1‑149 (MQ=255)                                                                                          ttCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAGGCTTTGCt                                                     >  8:210032/1‑149 (MQ=255)                                                                                            ccTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAGGCTTTGCTc                                                    <  2:214382/148‑1 (MQ=255)                                                                                               cgcacgcaGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAGGCTTTGCTCGCtg                                                >  3:156290/1‑149 (MQ=255)                                                                                                gcacgcaGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAGGCTTTGCTCGCtg                                                <  4:156290/148‑1 (MQ=255)                                                                                                gcacgcaGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAGGCTTTGCTCGCtg                                                <  2:216685/148‑1 (MQ=255)                                                                                                 gacgcaGCGATGTAGTGGACGGTGCGCG‑ATCGCTGGCTGTGCTCGATGGCGTCGAGGAACAGTTGCTTGAGGTTGGGGTCGGTGATGTCAAGCATGTGCAGCAGGTTGATGTTCAGCGCGCGGATAGTTTTGAGGCTTTGCTCGCtggt                                              <  5:184698/148‑1 (MQ=255)                                                                                                  acgcaGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAg                                                                                                                                                   >  2:195347/1‑47 (MQ=255)                                                                                                     caGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGt                                                                                                                <  7:94450/79‑1 (MQ=255)                                                                                                     caGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGt                                                                                                                >  8:94450/1‑79 (MQ=255)                                                                                                                   aCGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGgcgtcgactacatcgctgcgtgcgaggaagccttccgcgacgtacgccgcatggagcaggactacaacgccctggtcgctgccggcccgttggtcgaggccctggccggtggcgtggcc                            <  5:82978‑M2/149‑120 (MQ=255)                                                                                                                    cGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGgcgtcgactacatcgctgcgtgcgaggaagccttccgcgacgtacgccgcatggagcaggactacaacgccctggtc                                                                      <  7:76273‑M2/106‑78 (MQ=255)                                                                                                                    cGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGgcgtcgactacatcgctgcgtgcgaggaagccttccgcgacgtacgccgcatggagcaggactacaacgccctggtc                                                                      >  8:76273‑M2/1‑29 (MQ=255)                                                                                                                     gCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAGGCTTTGCTCGCTGGTGGAACGCAGCGGGa                                <  4:311128/143‑1 (MQ=255)                                                                                                                     gCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAGGCTTTGCTCGCTGGTGGAACGCAGCGGGa                                >  3:311128/1‑143 (MQ=255)                                                                                                                          ccG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAgcgcgc                                                                          <  8:42918/96‑1 (MQ=255)                                                                                                                          ccG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAGGCTTTGCTCGCTGGTGGAACGCAGCGGGATCATGGTCAgg                     <  4:168936/149‑1 (MQ=255)                                                                                                                            g‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAGGc                                                           <  2:194152/109‑1 (MQ=255)                                                                                                                            g‑AGCGCAGGCTGTGCTCGAAGGCGTCGACGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAGGc                                                           >  1:194152/1‑109 (MQ=255)                                                                                                                                       tgtgCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAGGCTTTGCTCg                                                   >  6:113846/1‑107 (MQ=255)                                                                                                                                       tgtgCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAGGCTTTGCTCg                                                   <  5:113846/107‑1 (MQ=255)                                                                                                                                       tgtgCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAGGCTTTGCTCGCTGGTGGAACGCAGCGGGATCATGGTCAGGTCCAGCGGCAcc         >  4:333242/1‑149 (MQ=255)                                                                                                                                       tgtgCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAGGCTTTGCTCGCTGGTGGAACGCAGCGGGATCATGGTCAGGTCCAGCGGCAcc         >  2:269086/1‑149 (MQ=255)                                                                                                                                            tCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAGGCTTTGCTCGCTGGTGGAACGCAGCGGGATCATGGTCAGGTCCAGCGGCACCGAAgt    >  7:79044/1‑149 (MQ=255)                                                                                                                                              gAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAGGCTTTGCTCGCTGGTGGAACGCAGCGGGATCATGGTCAGGTCCAGCGGCACCGAAgtgt  >  5:222148/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                  GCCACGCCACCGGCCAGGGCCTCGACCAACGGGCCGGCAGCGACCAGGGCGTTGTAGTCCTGCTCCATGCGGCGTACGTCGCGGAAGGCTTCCTCGCACGCAGCGATGTAGTCGACGCTGCCCG‑AGCGCAGGCTGTGCTCGAAGGCGTCGAGGAACAGTTGCTTGAGCTTGGCGGCGGTGATCTCACGCATGTGCAGCAGGTTGATGAACAGCGCGCGGAAAGTTTTCAGGCTTTGCTCGCTGGTGGAACGCAGCGGGATCATGGTCAGGTCCAGCGGCACCGAAGTGT  >  NC_002947/806566‑806854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.