New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 818952	50 (0.950)	4 (0.080)	4/248	NT	7.8%	coding (106/627 nt)	PP_0705	DNA‑3‑methyladenine glycosylase
	?	NC_002947	= 818998	46 (0.890)					coding (152/627 nt)	PP_0705	DNA‑3‑methyladenine glycosylase

ATGCTGGCCGACCTTTCGCCTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGAAACCCTGCGTGCCTGCGGCTTTTCGGC  >  NC_002947/818850‑819145                                                                                                                                                     |                                                                                                                                                    atgCTGGCCGACCTTTCGCCTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCg                                                                                                                                                     <  6:212726/149‑1 (MQ=255)  tGCTGGCCGACCTTTCGCCTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGg                                                                                                                                                    <  3:148300‑M2/149‑2 (MQ=255)        ccGACCTTTCGCCTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGAtt                                                                                                                                              <  5:333107/149‑1 (MQ=255)         cGACCTTTCGCCTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTg                                                                                                                                             <  8:91351/149‑1 (MQ=255)           aCCTTTCGCCTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGcc                                                                                                                                           <  1:301031/149‑1 (MQ=255)                tCGCCTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTAc                                                                                                                                        <  8:273716/147‑1 (MQ=255)                   ccTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGAtt                                                                                                                                              >  2:294319/1‑138 (MQ=255)                   ccTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGAtt                                                                                                                                              <  1:294319/138‑1 (MQ=255)                       aGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAAc                                                                                                                                 <  2:191228/147‑1 (MQ=255)                         gCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCa                                                                                                                             >  6:14081/1‑149 (MQ=255)                            tATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGc                                                                                                                          >  6:352078/1‑149 (MQ=255)                             aTCACGAGGCCGCGCAACACCTGGCGGGACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGg                                                                                                                                                    <  3:55822‑M2/122‑2 (MQ=255)                             aTCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGg                                                                                                                                                    >  4:55822‑M2/1‑121 (MQ=255)                             aTCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGcc                                                                                                                         >  5:54590/1‑149 (MQ=255)                              tCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGccc                                                                                                                        <  6:54590/149‑1 (MQ=255)                               cACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGa                                                                                                                                                <  7:80451/124‑1 (MQ=255)                               cACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGa                                                                                                                                                >  8:80451/1‑124 (MQ=255)                               cACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCcg                                                                                                                       >  6:118841/1‑149 (MQ=255)                                  gAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCa                                                                                                                             >  8:36861/1‑140 (MQ=255)                                  gAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCa                                                                                                                             <  7:36861/140‑1 (MQ=255)                                      ccGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCgccgcc                                                                                                                >  7:124407/1‑149 (MQ=255)                                        gcgcAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCgccgcc                                                                                                                >  6:173244/1‑147 (MQ=255)                                            aaCACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGc                                                                                                           >  6:43609/1‑148 (MQ=255)                                             acacCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGa                                                                                                         <  5:352078/149‑1 (MQ=255)                                                 cTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCCTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCt                                                                                                     >  2:44006/1‑149 (MQ=255)                                                    gcggcACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTg                                                                                                    <  4:148300/147‑1 (MQ=255)                                                    gcggcACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCCTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTggg                                                                                                  <  1:44006/149‑1 (MQ=255)                                                         aCTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGtt                                                                                             <  5:118841/149‑1 (MQ=255)                                                             gACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTg                                                                                           <  8:124407/147‑1 (MQ=255)                                                                  ggACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACt                                                                                                                                <  2:253909/105‑1 (MQ=255)                                                                  ggACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACt                                                                                                                                >  1:253909/1‑105 (MQ=255)                                                                           aCGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCgg                                                                           >  3:250998/1‑149 (MQ=255)                                                                               cATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCgg                                                                           >  7:65860/1‑145 (MQ=255)                                                                                     gCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGAttt                                                                 >  8:211250/1‑149 (MQ=255)                                                                                      cAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAgat                                                                      <  1:165295/143‑1 (MQ=255)                                                                                      cAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAgat                                                                      >  2:165295/1‑143 (MQ=255)                                                                                                gCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTc                                                               <  8:280548/140‑1 (MQ=255)                                                                                                gCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTc                                                               >  7:280548/1‑140 (MQ=255)                                                                                                   ctgcctgcACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGggcagggcccgatcgctgcgatatgctgtgaccagtccgggtcaagtgccgccaggtgttgcgcg                                                                                    <  6:191840‑M2/116‑66 (MQ=255)                                                                                                   ctgcctgcACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGggcagggcccgatcgctgcgatatgctgtgaccagtccgggtcaagtgccgccaggtgttgcgcg                                                                                    >  5:191840‑M2/1‑51 (MQ=255)                                                                                                    tgcctgcACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGggcagagcccgatcgctgcgatatgccgtgaccagtccgggtcaagtgccgccaggtgttgcgcggcctcgtgataggcctcaggcgaaaggtcggc                                                    <  6:283983‑M2/147‑98 (MQ=255)                                                                                                    tgcctgcACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCagag                                                    >  1:99890/1‑147 (MQ=255)                                                                                                      cctgcACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGt                                                >  3:49509/1‑149 (MQ=255)                                                                                                          cACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGAtt                                                                  <  5:93387/127‑1 (MQ=255)                                                                                                          cACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCt                                            >  3:61342/1‑149 (MQ=255)                                                                                                          cACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGAGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGAtt                                                                  >  6:93387/1‑127 (MQ=255)                                                                                                           aCCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCa                                                                         >  4:314221/1‑119 (MQ=255)                                                                                                           aCCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCa                                                                         <  3:314221/119‑1 (MQ=255)                                                                                                           aCCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAga                                                                       <  6:9210/121‑1 (MQ=255)                                                                                                           aCCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAga                                                                       >  5:9210/1‑121 (MQ=255)                                                                                                                          gACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGa                             >  5:253100/1‑148 (MQ=255)                                                                                                                            cGTGAGCCTTATGAGGCATTGGTGCGggcagtgcccgatcgctgcgatatgccgtgaccagtccgggtcaagtgccgccaggtgttgcgcggcctcgtgataggcctcaggcgaaaggtcggccagcatcatggcacctccatcaagtc                          >  5:283983‑M2/1‑26 (MQ=255)                                                                                                                             gTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGAAAcc                         <  4:250998/149‑1 (MQ=255)                                                                                                                                aGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGAAACCCt                       <  8:65860/148‑1 (MQ=255)                                                                                                                                  ccTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGAAACCCTGCg                    >  8:104704/1‑149 (MQ=255)                                                                                                                                  ccTTATGAGGAATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGt                                                                                 <  1:209588/88‑1 (MQ=255)                                                                                                                                  ccTTATGAGGAATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGt                                                                                 >  2:209588/1‑88 (MQ=255)                                                                                                                                        gAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGAAACCCTGCGTGCCTg              >  4:325807/1‑149 (MQ=255)                                                                                                                                         aGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGAAACCCTGCGTGCCTGc             >  8:255366/1‑149 (MQ=255)                                                                                                                                         aGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGAAACCCTGCGTGCCTGc             >  2:158631/1‑149 (MQ=255)                                                                                                                                                    cGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGAAACCCTGCGTGCCTGCGGCTTTTCGGc  <  5:173244/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    ATGCTGGCCGACCTTTCGCCTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGCTACGCCGGGACGTGAGCCTTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGAAACCCTGCGTGCCTGCGGCTTTTCGGC  >  NC_002947/818850‑819145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.