New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1318866 =	57 (1.080)	5 (0.100)	4/246	NT	9.5%	coding (90/870 nt)	PP_1152	membrane fusion efflux protein
	?	NC_002947	1318909 =	40 (0.780)					coding (133/870 nt)	PP_1152	membrane fusion efflux protein

TAAAGGAGTGTTTCGATGCGTGCGGCCGTACGTATTCTGGTGACCCTGTGTGTGGTGGCCCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGCGACTTGTTGATGAGTATTGACCGCGAGCGCTTCCAGGCCGCGCTCGATCAGGCCAGCGCGGTGACC  >  NC_002947/1318762‑1319046                                                                                                                                                    |                                                                                                                                          aagcgctcgcggtcaatactcatcaacaagtcgccagccttgacctgctggttgtcatggaccttgagttcgcgaacccagccggacacatcaggcgcaatcacCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATgtggtggt                                                                                                                                          >  2:290661‑M1/105‑149 (MQ=255)  aaaGGAGTGTTTCGATGCGTGCGGCCGTACGTATTCTGGTGACCCTGTGTGTGGTGGCCCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATgtggtggt                                                                                                                                          >  5:159094/1‑148 (MQ=255)    aGGAGTGTTTCGATGCGTGCGGCCGTACGTATTCTGGTGACCCTGTGTGTGGTGGCCCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGAt                                                                                                                                       >  3:266673/1‑149 (MQ=255)         tgtTTCGATGCGTGCGGCCGTACGTATTCTGGTGACCCTGTGTGTGGTGGCCCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTgcgc                                                                                                                                  <  2:60635/149‑1 (MQ=255)               gATGCGTGCGGCCGTACGTATTCTGGTGACCCTGTGTGTGGTGGCCCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGAtg                                                                                                                            >  7:274027/1‑149 (MQ=255)               gATGCGTGCGGCCGTACGTATTCTGGTGACCCTGTGTGTGGTGGCCCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGAt                                                                                                                             <  6:31190/148‑1 (MQ=255)                          ccGTACGTATTCTGGTGACCCTGTGTGTGGTGGCCCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTgg                                                                                                                 <  4:266673/149‑1 (MQ=255)                            gtacgtaTTCTGGTGACCCTGTGTGTGGTGGCCCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGt                                                                                                               >  7:111644/1‑149 (MQ=255)                                      tGGTGACCCTGTGTGTGGTGGCCCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTgg                                                                                                                 <  4:156886/137‑1 (MQ=255)                                      tGGTGACCCTGTGTGTGGTGGCCCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTgg                                                                                                                 >  3:156886/1‑137 (MQ=255)                                        gTGACCCTGTGTGTGGTGGCCCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTc                                                                                                     >  4:168161/1‑147 (MQ=255)                                        gTGACCCTGTGTGTGGTGGCCCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCaa                                                                                                   <  1:118164/149‑1 (MQ=255)                                           agccTGTGTGTGGTGTGGCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCATTACTAATTGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGGCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAgg                                                                                                 <  1:327736/146‑1 (MQ=255)                                             ccTGTGTGTGGTGGCCCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTcc                                                                                              <  2:96348/149‑1 (MQ=255)                                             ccTGTGTGTGGTGGCCCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGACTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTc                                                                                               >  5:217421/1‑148 (MQ=255)                                               tgtgtgtgGTGGCCCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGACTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCAt                                                                                            >  7:199050/1‑149 (MQ=255)                                                 tgtgtgGTGGCCCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCAt                                                                                            <  4:89102/147‑1 (MQ=255)                                                       gtggCCCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAgg                                                                                                 <  5:287892/136‑1 (MQ=255)                                                       gtggCCCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAgg                                                                                                 >  6:287892/1‑136 (MQ=255)                                                            ccTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTgcgc                                                                                                                                  <  3:28211/98‑1 (MQ=255)                                                            ccTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTgcgc                                                                                                                                  >  4:28211/1‑98 (MQ=255)                                                            ccTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAgg                                                                               >  7:234006/1‑149 (MQ=255)                                                                gCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTc                                                                             >  3:234182/1‑147 (MQ=255)                                                                  cGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGt                                                                              <  8:212352/144‑1 (MQ=255)                                                                  cGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGt                                                                              >  7:212352/1‑144 (MQ=255)                                                                  cGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAgg                                                                         >  6:250606/1‑149 (MQ=255)                                                                      ttGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGTAGGTCAAGGCTgg                                                                     <  8:234006/149‑1 (MQ=255)                                                                         gCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTc                                                                                                     >  1:209054/1‑114 (MQ=255)                                                                         gCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTc                                                                                                     <  2:209054/114‑1 (MQ=255)                                                                          ccGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGc                                                                    <  2:315324/146‑1 (MQ=255)                                                                          ccGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGc                                                                    <  2:311077/146‑1 (MQ=255)                                                                          ccGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGc                                                                    >  1:315324/1‑146 (MQ=255)                                                                          ccGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGc                                                                    >  1:311077/1‑146 (MQ=255)                                                                               tACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATCGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAg                                                                          >  5:180755/1‑135 (MQ=255)                                                                               tACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATCGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAg                                                                          <  6:180755/135‑1 (MQ=255)                                                                                 ccAGCTGTTGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGCGACttgtt                                                            <  8:274027/147‑1 (MQ=255)                                                                                        tgGCAGTACTACATGATCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTTATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGCGACTTGTTGATGAGTa                                                    <  6:217421/148‑1 (MQ=255)                                                                                             gTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGCGACTTGTTGATGAGTATTGAcc                                              <  6:25733/149‑1 (MQ=255)                                                                                                   cATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGCGACtt                                                               >  6:11861/1‑126 (MQ=255)                                                                                                   cATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGCGACtt                                                               <  5:11861/126‑1 (MQ=255)                                                                                                   cATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGCGACTTGTTGATGAGTATTGACCGCGa                                          <  6:159094/147‑1 (MQ=255)                                                                                                   cATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGCGACTTGTTGATGAGTATTGACCGCGAgc                                        >  6:131770/1‑149 (MQ=255)                                                                                                       accaccacatcggcgcgcacacgggcatcacgcgtccatggggtgGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGCGACTTGTTGATGAGTATTGACCGCGAGCGCtt                                    >  2:290661‑M2/46‑149 (MQ=255)                                                                                                         caccacatcggcgcgcacacgggcatcacgcgtccatggggtgGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGCGACtt                                                               >  6:286250‑M2/44‑120 (MQ=255)                                                                                                         caccacatcggcgcgcacacgggcatcacgcgtccatggggtgGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGCGACtt                                                               <  5:286250‑M2/77‑1 (MQ=255)                                                                                                         caccacatcggcgcgcacacgggcatcacgcgtccatggggtgGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGCGACTTGTTGATGAGTATTGACCGCGAGCGCTTc                                   >  4:58361‑M2/44‑148 (MQ=255)                                                                                                          ACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGCGACTTGTTGATGAGTATTGACCGCGAGCGCTTc                                   >  8:199050‑M1/1‑147 (MQ=255)                                                                                                                             cccGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGCGACTTGTTGATGAGTATTGACCGCGAGCGCTTCCAGGCCGCGCTCGATCAGGc               <  5:250606/148‑1 (MQ=255)                                                                                                                                         tccatggggtgGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGCGACTTGTTGATGAGTATTGACCGCGAGCGCTTCCAGGCCGCGCTCGATCAGGCCAGCGCGGTGAcc  <  3:58361‑M2/138‑1 (MQ=255)                                                                                                                                               tggtggtgATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGCGACttg                                                              >  4:227726/1‑83 (MQ=255)                                                                                                                                               tggtggtgATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGCGACttg                                                              <  3:227726/83‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                          TAAAGGAGTGTTTCGATGCGTGCGGCCGTACGTATTCTGGTGACCCTGTGTGTGGTGGCCCTGGCCGTGTTGGCCGGCTACCAGCTGTGGCAGTACTACATGCTCACCCCATGGACGCGTGATGCCCGTGTGCGCGCCGATGTGGTGGTGATTGCGCCTGATGTGTCCGGCTGGGTTCGCGAACTCAAGGTCCATGACAACCAGCAGGTCAAGGCTGGCGACTTGTTGATGAGTATTGACCGCGAGCGCTTCCAGGCCGCGCTCGATCAGGCCAGCGCGGTGACC  >  NC_002947/1318762‑1319046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.