New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1465748 =	64 (1.210)	3 (0.060)	3/240	NT	5.4%	coding (1443/1560 nt)	algG	poly(beta‑D‑mannuronate) C5 epimerase
	?	NC_002947	1465806 =	44 (0.880)					coding (1385/1560 nt)	algG	poly(beta‑D‑mannuronate) C5 epimerase

ACCGGGTCGATCAGCACAGCCTTCTGCTGGCGTACCAGCAGGTCGAGGATTTCGTCCTGGCGCTCGCCCAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGCGGTCGGTGTCGGACAGGTCTTTGATGTGGCCGTATACGCCGAC  >  NC_002947/1465659‑1465945                                                                                                                                                    |                                                                                                                                            gccctcgacccgttcgacaccaaggtgtcgctggtcgtggtgggtggcgagctgtcggccaacggctccggcccgctgtcgatcgactcGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGa                                                                                                                                            >  1:99159‑M1/90‑149 (MQ=255) aCCGGGTCGATCAGCACAGCCTTCTGCTGGCGTACCAGCAGGTCGAGGATTTCGTCCTGGCGCTCGCCCAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGa                                                                                                                                            <  4:346609/149‑1 (MQ=255)       tCGATCAGCACAGCCTTCTGCTGGCGTACCAGCAGGTCGAGGATTTCGTCCTGGCGCTCGCCCAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGtcgat                                                                                                                                      <  8:78571/149‑1 (MQ=255)          aTCAGCACAGCCTTCTGCTGGCGTACCAGCAGGTCGAGGATTTCGTCCTGGCGCTCGCCCAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGtcgatcga                                                                                                                                   <  1:213986/149‑1 (MQ=255)                acaGCCTTCTGCTGGCGTACCAGCAGGTCGAGGATTTCGTCCTGGCGCTCGCCCAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCgg                                                                                                                             <  4:303681/149‑1 (MQ=255)                  aGCCTTCTGCTGGCGTACCAGCAGGTCGAGGATTTCGTCCTGGCGCTCGCCCAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGc                                                                                                                           >  4:236320/1‑149 (MQ=255)                    ccTTCTGCTGGCGTACCAGCAGGTCGAGGATTTCGTCCTGGCGCTCGCCCAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGACGATCGACAGCGGGCCg                                                                                                                         <  8:114400/149‑1 (MQ=255)                       tCTGCTGGCGTACCAGCAGGTCGAGGATTTCGTCCTGGCGCTCGCCCAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGa                                                                                                                       <  3:90817/148‑1 (MQ=255)                             ggCGTACCAGCAGGTCGAGGATTTCGTCCTGGCGCTCGCCCAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTg                                                                                                                <  3:236320/149‑1 (MQ=255)                                gTACCAGCAGGTCGAGGATTTCGTCCTGGCGCTCGCCCAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGcc                                                                                                             <  5:68846/149‑1 (MQ=255)                                    cagcagGTCGAGGATTTCGTCCTGGCGCTCGCCCAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGa                                                                                                           >  5:18625/1‑147 (MQ=255)                                    cagcagGTCGAGGATTTCGTCCTGGCGCTCGCCCAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACa                                                                                                         >  2:6955/1‑149 (MQ=255)                                     agcagGTCGAGGATTTCGTCCTGGCGCTCGCCCAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAg                                                                                                        >  8:267455/1‑149 (MQ=255)                                      gcagGTCGAGGATTTCGTCCTGGCGCTCGCCCAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGc                                                                                                       >  1:346578/1‑149 (MQ=255)                                             gAGGATTTCGTCCTGGCGCTCGCCCAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGt                                                                                                                                          >  6:27591/1‑107 (MQ=255)                                             gAGGATTTCGTCCTGGCGCTCGCCCAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGt                                                                                                                                          <  5:27591/107‑1 (MQ=255)                                             gAGGATTTCGTCCTGGCGCTCGCCCAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGACCGGAGCCGTTg                                                                                                                >  4:60195/1‑133 (MQ=255)                                             gAGGATTTCGTCCTGGCGCTCGCCCAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGACCGGAGCCGTTg                                                                                                                <  3:60195/133‑1 (MQ=255)                                                                    ccAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTg                                                                         <  7:267455/149‑1 (MQ=255)                                                                    ccAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTg                                                                         >  8:61863/1‑149 (MQ=255)                                                                    ccAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTg                                                                         <  1:6955/149‑1 (MQ=255)                                                                    ccAGCACACCATTGAGGCTGATGCCGCTCGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTg                                                                         >  1:196672/1‑149 (MQ=255)                                                                     cAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTgg                                                                        >  2:148231/1‑149 (MQ=255)                                                                      aGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGgt                                                                       <  6:139640/149‑1 (MQ=255)                                                                           acCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGTGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCg                                                                   >  1:285056/1‑148 (MQ=255)                                                                             cATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGAGGGCCGTAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAAc                                                                >  7:71570/1‑149 (MQ=255)                                                                              aTTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACg                                                               <  2:346578/149‑1 (MQ=255)                                                                               ttGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGAc                                                                                                          <  8:132650/105‑1 (MQ=255)                                                                               ttGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGAc                                                                                                          >  7:132650/1‑105 (MQ=255)                                                                                    gCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTc                                                           >  6:304486/1‑147 (MQ=255)                                                                                    gCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGa                                                         <  2:196672/149‑1 (MQ=255)                                                                                        tcgccgctgtcggtcgagctgtacaaggtgtccatgctcgccccgcgcaaggccagcggcGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGACCAGCGACACCTTGGTGTCGAACGGGTCGAGGGc                                                     >  1:99159‑M2/61‑149 (MQ=255)                                                                                        aTGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGc                                                     <  5:304486/149‑1 (MQ=255)                                                                                         tGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGgtgt                                                                     <  3:315874/132‑1 (MQ=255)                                                                                         tGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGgtgt                                                                     >  4:315874/1‑132 (MQ=255)                                                                                          gccgctgtcggtcgagctgtacaaggtgtccatgctcgccccgcgcaaggccagcggcGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACAACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGa                                                   >  7:172297‑M2/59‑149 (MQ=255)                                                                                          GCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGa                                                                                       >  7:237742‑M1/1‑113 (MQ=255)                                                                                          GCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGa                                                                                       <  8:237742‑M1/113‑1 (MQ=255)                                                                                                   ggtcgagctgtacaaggtgtccatgctcgccccgcgcaaggccagcggcGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGACCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGcggt                                          <  2:99159‑M2/100‑1 (MQ=255)                                                                                                    ttGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGcggtc                                         >  5:235653/1‑149 (MQ=255)                                                                                                               gAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGCGGTCGGTGTCGGa                                >  5:114089/1‑147 (MQ=255)                                                                                                                 gCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGCGGTCGGTGTCGGACAgg                            >  4:295026/1‑149 (MQ=255)                                                                                                                       acacCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGc                                                     <  8:33675/118‑1 (MQ=255)                                                                                                                       acacCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGCGGTCGGTGTCGGACAGGTCttt                       >  7:21097/1‑148 (MQ=255)                                                                                                                         acCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGCGGTCGGTGTCGGACAGGTCTTTGAt                    <  2:285056/149‑1 (MQ=255)                                                                                                                         acCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGCGGTCGGTGTCGGACAGGTCTTTGAt                    <  6:114089/149‑1 (MQ=255)                                                                                                                           cTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGCGGTCGGTGTCGGACAGGTCTTTGAtgt                  <  3:295026/149‑1 (MQ=255)                                                                                                                             tGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGCGGTCGGTGTc                                   <  4:34483/130‑1 (MQ=255)                                                                                                                             tGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGCGGTCGGTGTc                                   >  3:34483/1‑130 (MQ=255)                                                                                                                                aCAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGCGGTCGGTGTCGGACAGGTCTTTGATGTGGCCg             >  6:261233/1‑149 (MQ=255)                                                                                                                                  aGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGCGGTCGgtgt                                    <  1:331903/124‑1 (MQ=255)                                                                                                                                  aGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGCGGTCGgtgt                                    >  2:331903/1‑124 (MQ=255)                                                                                                                                       gaccgacAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGCGGTCGGTGTCGGACAGGTCTTTGATGTGGCCGTATACGc      >  5:106880/1‑149 (MQ=255)                                                                                                                                          cgacAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGCGGTCGGTGTCGGACAGGTCTTTGATGTGGCCGTATACGCCGa   <  6:235653/149‑1 (MQ=255)                                                                                                                                           gacAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACGCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGCGGTCGGTGTCGGACAGGTCTTTGATGTGGCCGTATACGCCGAc  <  7:61863/149‑1 (MQ=255)                                                                                                                                                cggcGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGcggtcggt                                      >  7:76463‑M2/5‑108 (MQ=255)                                                                                                                                                cggcGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGcggtcggt                                      <  8:76463‑M2/104‑1 (MQ=255)                                                                                                                                                cggcGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGCGGTCGGTGTCGGACAGGTCTTTGATGTGGCCGt            <  3:252067‑M2/130‑1 (MQ=255)                                                                                                                                                cggcGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGCGGTCGGTGTCGGACAGGTCTTTGATGTGGCCGt            >  4:252067‑M2/5‑134 (MQ=255)                                                                                                                                                    |                                                                                                                                            ACCGGGTCGATCAGCACAGCCTTCTGCTGGCGTACCAGCAGGTCGAGGATTTCGTCCTGGCGCTCGCCCAGCACACCATTGAGGCTGATGCCGCTGGCCTTGCGCGGGGCGAGCATGGACACCTTGTACAGCTCGACCGACAGCGGCGAGTCGATCGACAGCGGGCCGGAGCCGTTGGCCGACAGCTCGCCACCCACCACGATCAGCGACACCTTGGTGTCGAACGGGTCGAGGGCGATGTCGCGGTCGGTGTCGGACAGGTCTTTGATGTGGCCGTATACGCCGAC  >  NC_002947/1465659‑1465945

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.