New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1581220	48 (0.910)	4 (0.080)	4/248	NT	7.8%	coding (177/3153 nt)	ttgB	efflux pump membrane protein TtgB
	?	NC_002947	= 1581255	48 (0.930)					coding (142/3153 nt)	ttgB	efflux pump membrane protein TtgB

CCTGTTCGAAGGTGGCGGTAATGGTCATGCTGCCGTCGGAGTTACTTTCCGACGACACATAACGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGG  >  NC_002947/1581108‑1581398                                                                                                                                                    |                                                                                                                                                 ccTGTTCGAAGGTGGCGGTAATGGTCATGCTGCCGTCGGAGTTACTTTCCGACGACACATAACGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGt                                                                                                                                                  >  2:58049/1‑148 (MQ=255)   tGTTCGAAGGTGGCGGTAATGGTCATGCTGCCGTCGGAGTTACTTTCCGACGACACATAACGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTcac                                                                                                                                               <  1:49739‑M2/149‑4 (MQ=255)   tGTTCGAAGGTGGCGGTAATGGTCATGCTGCCGTCGGAGTTACTTTCCGACGACACATAACGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTcac                                                                                                                                               <  5:169747‑M2/149‑4 (MQ=255)          aGGTGGCGGTAATGGTCATGCTGCCGTCGGAGTTACTTTCCGACGACACATAACGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACggcgatg                                                                                                                                        <  3:180237/149‑1 (MQ=255)                  gTAATGGTCATGCTGCCGTCGGAGTTACTTTCCGACGACACATAACGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCgatggcgatggc                                                                                                                                >  2:169694/1‑149 (MQ=255)                  gTAATGGTCATGCTGCCGTCGGAGTTACTTTCCGACGACACATAACGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCgatggcgatggc                                                                                                                                >  5:128519/1‑149 (MQ=255)                        gTCATGCTGCCGTCGGAGTTACTTTCCGACGACACATAACGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCCCGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTggcgg                                                                                                                          >  7:72867/1‑149 (MQ=255)                              ctgcCGTCGGAGTTACTTTCCGACGACACATAACGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGa                                                                                                                     <  7:170375/148‑1 (MQ=255)                                    tCGGAGTTACTTTCCGACGACACATAACGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTgg‑g                                                                                                             >  1:85877/1‑149 (MQ=255)                                              tttCCGACGACACATAACGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGtt                                                                                                    >  3:125509/1‑148 (MQ=255)                                                  cgacgaCACATAACGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATc                                                                                                <  6:128519/148‑1 (MQ=255)                                                    acgacACATAACGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCgg                                                                                              >  4:296318/1‑148 (MQ=255)                                                    acgacACATAACGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCgg                                                                                              >  2:54262/1‑148 (MQ=255)                                                          caTAACGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTc                                                                                       <  2:85877/149‑1 (MQ=255)                                                           aTAACGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGAtggct                                                                                                                               >  8:173654/1‑109 (MQ=255)                                                           aTAACGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGgcgc                                                                                                                       >  8:239088/1‑117 (MQ=255)                                                              aCGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAgg                                                                                    <  1:169694/148‑1 (MQ=255)                                                              aCGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGa                                                                                   >  7:247364/1‑149 (MQ=255)                                                                  aGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGa                                                                               <  1:54262/149‑1 (MQ=255)                                                                   ggTTGTCGATACCGTTGAGCTGCGGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGAc                                                                              <  8:72867/149‑1 (MQ=255)                                                                        tCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGGAGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAgg                                                                          <  1:58049/149‑1 (MQ=255)                                                                          gATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGcc                                                                        <  3:296318/148‑1 (MQ=255)                                                                                gTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTg                                                                                                                >  3:118676/1‑103 (MQ=255)                                                                                gTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTg                                                                                                                <  4:118676/103‑1 (MQ=255)                                                                                         ctgctCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACtt                                                                                                       <  8:138086/102‑2 (MQ=255)                                                                                         ctgctCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTg                                                                                                       >  7:138086/1‑102 (MQ=255)                                                                                          tgctCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGc                                                                                             >  4:184619/1‑111 (MQ=255)                                                                                            ctCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCAcc                                                      >  4:164595/1‑148 (MQ=255)                                                                                            ctCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCAc                                                       <  6:53369/147‑1 (MQ=255)                                                                                            ctCGATCACCTGCACCACGGGGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAgg                                                                          <  4:303884/128‑1 (MQ=255)                                                                                               gATCACCTGCACCCCGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAgg                                                  >  6:197916/1‑149 (MQ=255)                                                                                                aTCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGc                                                 >  6:240109/1‑149 (MQ=255)                                                                                                 tCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGc                                                 >  6:197612/1‑148 (MQ=255)                                                                                                     cTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGcccc                                                                      >  5:268744/1‑123 (MQ=255)                                                                                                     cTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGcccc                                                                      <  6:268744/123‑1 (MQ=255)                                                                                                        caccacGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGAt                                                                                  >  5:247381/1‑108 (MQ=255)                                                                                                        caccacGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGAt                                                                                  <  6:247381/108‑1 (MQ=255)                                                                                                         accacGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCa                                        <  8:247364/149‑1 (MQ=255)                                                                                                          ccacGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAg                                       <  5:240109/149‑1 (MQ=255)                                                                                                          ccacGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAg                                       >  5:74815/1‑149 (MQ=255)                                                                                                           cacGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTcaccgtggtgcaggtgatcgagcagcagctcaacggtatcgacaacctgcgttatgtgtcgtcggaaa                                                                              >  1:44149‑M2/1‑42 (MQ=255)                                                                                                           cacGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTcaccgtggtgcaggtgatcgagcagcagctcaacggtatcgacaacctgcgttatgtgtcgtcggaaa                                                                              <  2:44149‑M2/110‑69 (MQ=255)                                                                                                           cacGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAgg                                      >  7:148586/1‑149 (MQ=255)                                                                                                           cacGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAgg                                      <  2:49739/149‑1 (MQ=255)                                                                                                            acGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTcaccgtggtgcaggtgatcgagcagcagctcaacggtatcgacaacctgcgttatgtgtcgtcggaaagtaactccgacggcagcatgaccattaccgccaccttcg                                       <  2:44339‑M2/148‑108 (MQ=255)                                                                                                               gtgtCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCa                                                              <  2:125055/121‑1 (MQ=255)                                                                                                               gtgtCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCa                                                              >  1:125055/1‑121 (MQ=255)                                                                                                                tgtCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTcaccgtggtgcaggtgatcgagcagcagctcaacggtatcgacaacctgcgttatgtgtcgtcggaaagtaactccgacggcagcatgaccattaccgccaccttcgaacag                                  >  1:44339‑M2/1‑37 (MQ=255)                                                                                                                         cGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGcga                        <  4:125509/149‑1 (MQ=255)                                                                                                                              tGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGcgatcga                    <  6:74815/148‑1 (MQ=255)                                                                                                                                    gAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCa                                                                                      <  1:200708/76‑1 (MQ=255)                                                                                                                                    gAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCa                                                                                      >  2:200708/1‑76 (MQ=255)                                                                                                                                    gAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGaa             <  5:197916/149‑1 (MQ=255)                                                                                                                                         gcCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTc         >  4:61891/1‑148 (MQ=255)                                                                                                                                               gTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATgg  <  3:61891/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 CCTGTTCGAAGGTGGCGGTAATGGTCATGCTGCCGTCGGAGTTACTTTCCGACGACACATAACGCAGGTTGTCGATACCGTTGAGCTGCTGCTCGATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGG‑GGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGG  >  NC_002947/1581108‑1581398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.