New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2569069	26 (0.490)	4 (0.080)	4/242	NT	14.1%	coding (479/1050 nt)	PP_2252	hypothetical protein
	?	NC_002947	= 2569108	24 (0.480)					coding (440/1050 nt)	PP_2252	hypothetical protein

CCCGCAGCAGCTGATACAGGCTGGCATTGCGCGCATCCGGTGGCCCCAGGGCGATGGCGGGGATACGGTTGAGGCGCTGGCTGAACTGCTCGGGCGGCGCGTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTCGCGGATGCCCTCGGGGTTGATCTGCTCGGCCACCGGCTCGAT‑‑‑CACCCGCGCGCGATACTGCTCCTGCAGGTACAGAGCCAGGCGTTTTTCTGCCGGTTCCCGCCCCTCGCCGCTGTCGAGC  >  NC_002947/2568962‑2569251                                                                                                                                                   |                                                                                                                                                   cccGCAGCAGCTGATACAGGCTGGCATTGCGCGCATCCGGTGGCCCCAGGGCGATGGCGGGGATACGGTTGAGGCGCTGGCTGAACTGCTCGGGCGGCGCGTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCa                                                                                                                                                    >  6:328233/1‑147 (MQ=255) cccGCAGCAGCTGATACAGGCTGGCATTGCGCGCATCCGGTGGCCCCAGGGCGATGGCGGGGATACGGTTGAGGCGCTGGCTGAACTGCTCGGGCGGCGCGTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCa                                                                                                                                                    <  5:328233/147‑1 (MQ=255)           cTGATACAGGCTGGCATTGCGCGCATCCGGTGGCCCCAGGGCGATGGCGGGGATACGGTTGAGGCGCTGGCTGAACTGCTCGGGCGGCGCGTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGc                                                                                                                                        <  7:272822/149‑1 (MQ=255)            tGATACAGGCTGGCATTGCGCGCATCCGGTGGCCCCAGGGCGATGGCGGGGATACGGTTGAGGCGCTGGCTGAACTGCTCGGGCGGCGCGTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCg                                                                                                                                         >  7:174371/1‑147 (MQ=255)                aCAGGCTGGCATTGCGCGCATCCGGTGGCCCCAGGGCGATGGCGGGGATACGGTTGAGGCGCTGGCTGAACTGCTCGGGCGGCGCGTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGgcg                                                                                                                                   >  7:109597/1‑149 (MQ=255)                      tGGCATTGCGCGCATCCGGTGGCCCCAGGGCGATGGCGGGGATACGGTTGAGGCGCTGGCTGAACTGCTCGGGCGGCGCGTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTcg                                                                                                                             >  1:267679/1‑149 (MQ=255)                               gcgcATCCGGTGGCCCCAGGGCGATGGCGGGGATACGGTTGAGGCGCTGGCTGAACTGCTCGGGCGGCGCGTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTCGCGGATGcc                                                                                                                     >  2:321009/1‑148 (MQ=255)                                   aTCCGGTGGCCCCAGGGCGATGGCGGGGATACGGTTGAGGCGCTGGCTGAACTGCTCGGGCGGCGCGTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGt                                                                                                                               <  4:26417/134‑1 (MQ=255)                                   aTCCGGTGGCCCCAGGGCGATGGCGGGGATACGGTTGAGGCGCTGGCTGAACTGCTCGGGCGGCGCGTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGt                                                                                                                               >  3:26417/1‑134 (MQ=255)                                                           ggggATACGGTTGAGGCGCTGGCTGAACTGCTCGGGCGGCGCGTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTcgc                                                                                                                            >  8:127079/1‑113 (MQ=255)                                                           ggggATACGGTTGAGGCGCTGGCTGAACTGCTCGGGCGGCGCGTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTcgc                                                                                                                            <  7:127073/113‑1 (MQ=255)                                                           ggggATACGGTTGAGGCGCTGGCTGAACTGCTCGGGCGGCGCGTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTcgc                                                                                                                            <  7:127079/113‑1 (MQ=255)                                                           ggggATACGGTTGAGGCGCTGGCTCAACTGCTCGGGCGGCGCGTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTcgc                                                                                                                            >  8:127073/1‑113 (MQ=255)                                                                             ctggctgAACTGCTCGGGCGGCGCGTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTCGCGGATGCCCTCGGGGTTGCTCTGCTCGGCCACCGGCTCGAT‑‑‑CACCCGCGCGCGa                                                                    >  6:180998/1‑148 (MQ=255)                                                                               ggctgAACTGCTCGGGCGGCGCGTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGACGCGGATGCCCTCg                                                                                                                 <  5:132416/104‑1 (MQ=255)                                                                               ggctgAACTGCTCGGGCGGCGCGTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGACGCGGATGCCCTCg                                                                                                                 >  6:132416/1‑104 (MQ=255)                                                                                gctgAACTGCTCGGGCGGCGCGTTGTACCGGCTGATGATCGCCGGCAGGTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTCGCGGATGCCCTCGGGGTTGATCTGCTCGGCCACCGGCTCGAT‑‑‑CACCCGCGCGCGATa                                                                  <  1:229487/147‑1 (MQ=255)                                                                                                 gcgcGTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTCGCGGATGCCCTCGGGGTTGATCTGCTCGGCCACCGGCTCGAT‑‑‑CACCCGCGCGCGATACTGCTCCTGCAGGTACaga                                               <  2:267679/149‑1 (MQ=255)                                                                                                  cgcgTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTCGCGGATGCCCTCGGGGTTGATCTGCTCGGCCACCGGCTCGAT‑‑‑CACCCGCGCGCGATACTGCTCCTGCAGGTACag                                                >  2:216072/1‑147 (MQ=255)                                                                                                  cgcgTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTCGCGGATGCCCTCGGGGTTGATCTGCTCGGCCACCGGCTCGAT‑‑‑CACCCGCGCGCGATACTGCTCCTGCAGGTACag                                                <  1:216072/147‑1 (MQ=255)                                                                                                    cgTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAggtacaacgcgccgcccgagcagttcagccagcgcctcaaccgtatccccgccatcgccctggggccaccggatgcgcgcaatgccagc                                                           <  3:198679‑M2/137‑90 (MQ=255)                                                                                                    cgTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAggtacaacgcgccgcccgagcagttcagccagcgcctcaaccgtatccccgccatcgccctggggccaccggatgcgcgcaatgccagc                                                           >  4:198679‑M2/1‑48 (MQ=255)                                                                                                      ttGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAggtacaacgcgccgcccgagcagttcagccagcgcctcaaccgtatccccgccatcgccctgg                                                                                     <  1:214938‑M2/109‑64 (MQ=255)                                                                                                      ttGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAggtacaacgcgccgcccgagcagttcagccagcgcctcaaccgtatccccgccatcgccctgg                                                                                     >  2:214938‑M2/1‑46 (MQ=255)                                                                                                      ttGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTCGCGGATGCCCTCGGGGTTGATCTGCTCGGCCACCGGCTCGAT‑‑‑CACCcgcgc                                                                        >  2:22549/1‑119 (MQ=255)                                                                                                         tACCGTCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTCGCGGATGCCCTCGGGGTTGATCTGCTCGGCCACCGGCTCGAT‑‑‑CACCCGCGCGCGATACTGCTCCTGCAGGTACAGAGCCAGGc                                        <  8:174371/148‑1 (MQ=255)                                                                                                                  atgatCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTCGCGGATGCCCTCGGGGTTGATCTGCTCGGCCACCGGCTCGAT‑‑‑CACCCGCGCGCGATACTGCTCCTGCAGGTACAGAGCCAGGCGTTTTTCTGc                              <  1:321009/149‑1 (MQ=255)                                                                                                                      tCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTCGCGGATGCCCTCGGGGTTGATCTGCTCGGCCACCGGCTCGAT‑‑‑CACCCGCGCGCGATACTGCTCCTGCAGGTACAGAGCCAGGCGTTTTTCTGCCGGt                          >  7:94032/1‑149 (MQ=255)                                                                                                                                      gACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTCGCGGATGCCCTCGGGGTTGATCTGCTCGGCCACCGGCTCGAT‑‑‑CACCCGCGCGCGATACTGCTCCTGCAGGTACAGAGCCAGGCGTTTTTCTGCCGGTTCCCGCCCCTcgcc            <  8:109597/147‑1 (MQ=255)                                                                                                                                         gAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTCGCGGATGCCCTCGGGGTTGATCTGCTCGGCCACCGGCTCGAT‑‑‑CACCCGCGCGCGATACTGCTCCTGCAGGTACAGAGCCAGGCGTTTTTCTGCCGGTTCCCGCCCCTCGCCGCTGt       >  6:7345/1‑149 (MQ=255)                                                                                                                                         gAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTCGCGGATGCCCTCGGGGTTGATCTGCTCGGCCACCGGCTCGAT‑‑‑CACCCGAGCGCGATACTGCTCCTGCAGGTACAGAGCCAGGCGTTTTTCTGCCGGTTCCCGCCCCTCGCCGCTGt       >  4:188097/1‑149 (MQ=255)                                                                                                                                                 gCAGGTACAGTTCGCAGGCGCGGTCGCGGATGCCCTCGGGGTTGATCTGCTCGGCCACCGGCTCGATAGACCCCCGCGCGCGATACTGCACGTGCAGGTACAGAGCCAGCCGTTTTTCTGCCGGTTCCCCCCCCTCGCCGGTGTCGAGc  >  1:104756/1‑149 (MQ=255)                                                                                                                                                  cAGGTACAGTTCGCAGGCGCGGTCGCGGATGCCCTCGGGGTTGATCTGCTCGGCCACCGGCTCGAT‑‑‑CACCCGCGCGCGATACTGCTCCTGCAGGTACAGAGCCAGGCGTTTTTCTg                               <  6:48740/116‑1 (MQ=255)                                                                                                                                                  cAGGTACAGTTCGCAGGCGCGGTCGCGGATGCCCTCGGGGTTGATCTGCTCGGCCACCGGCTCGAT‑‑‑CACCCGCGCGCGATACTGCTCCTGCAGGTACAGAGCCAGGCGTTTTTCTg                               >  5:48740/1‑116 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CCCGCAGCAGCTGATACAGGCTGGCATTGCGCGCATCCGGTGGCCCCAGGGCGATGGCGGGGATACGGTTGAGGCGCTGGCTGAACTGCTCGGGCGGCGCGTTGTACCGGCTGATGATCGCCGGCAGTTGCTGGACGAGCAGTTGCAGGTACAGTTCGCAGGCGCGGTCGCGGATGCCCTCGGGGTTGATCTGCTCGGCCACCGGCTCGAT‑‑‑CACCCGCGCGCGATACTGCTCCTGCAGGTACAGAGCCAGGCGTTTTTCTGCCGGTTCCCGCCCCTCGCCGCTGTCGAGC  >  NC_002947/2568962‑2569251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.