New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2955609	52 (0.980)	4 (0.080)	4/244	NT	7.6%	coding (832/843 nt)	PP_2587	LuxR family transcriptional regulator
	?	NC_002947	= 2955628	48 (0.950)					intergenic (+8/‑35)	PP_2587/PP_2588	LuxR family transcriptional regulator/class III aminotransferase

CGCAAGAACGTCTACGCCAAGCTCGACATCGGCACCCAGTCCGAACTGTTCTCCCTGTTCATCGATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGATGCCGCCCACCACATTCATGCCTTCCTCGACCAGAAGGCGCTGAACGCCGAAGGGC  >  NC_002947/2955486‑2955771                                                                                                                                               |                                                                                                                                                cGCAAGAACGTCTACGCCAAGCTCGACATCGGCACCCAGTCCGAACTGTTCTCCCTGTTCATCGATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCt                                                                                                                                                >  5:159586‑M2/1‑143 (MQ=255) cGCAAGAACGTCTACGCCAAGCTCGACATCGGCACCCAGTCCGAACTGTTCTCCCTGTTCATCGATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCt                                                                                                                                                <  6:159586‑M2/144‑2 (MQ=255)                  cAAGCTCGACATCGGCACCCAGTCCGAACTGTTCTCCCTGTTCATCGATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAg                                                                                                                          >  3:91627/1‑149 (MQ=255)                  cAAGCTCGACATCGGCACCCAGTCCGAACTGTTCTCCCTGTTCATCGATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAg                                                                                                                          >  8:263603/1‑149 (MQ=255)                   aaGCTCGACATCGGCACCCAGTCCGAACTGTTCTCCCTGTTCATCGATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCt                                                                                                                                           <  5:317634/131‑1 (MQ=255)                   aaGCTCGACATCGGCACCCAGTCCGAACTGTTCTCCCTGTTCATCGATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCt                                                                                                                                           >  6:317634/1‑131 (MQ=255)                       tCGACATCGGCACCCAGTCCGAACTGTTCTCCCTGTTCATCGATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGaaaa                                                                                                                     <  5:99020/149‑1 (MQ=255)                         gACATCGGCACCCAGTCCGAACTGTTCTCCCTGTTCATCGATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAAc                                                                                                                    <  7:263603/148‑1 (MQ=255)                           cATCGGCACCCAGTCCGAACTGTTCTCCCTGTTCATCGATGCGCTGGCCAGTGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACcaa                                                                                                                 <  7:212667/149‑1 (MQ=255)                           cATCGGCACCCAGTCCGAACTGTTCTCCCTGTTCATCGATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACcaa                                                                                                                 <  4:296491/149‑1 (MQ=255)                           cATCGGCACCCAGTCCGAACTGTTCTCCCTGTTCATCGATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACcaa                                                                                                                 >  4:18638/1‑149 (MQ=255)                                           gAACTGTTCTCCCTGTTCATCGATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCttt                                                                                                 <  5:148738/149‑1 (MQ=255)                                           gAACTGTTCTCCCTGTTCATCGATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCtt                                                                                                  >  6:148738/1‑148 (MQ=255)                                                      ccTGTTCATCGATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAAc                                                                                      <  4:91627/149‑1 (MQ=255)                                                      ccTGTTCATCGATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAAc                                                                                      >  1:173683/1‑149 (MQ=255)                                                            cATCGATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGa                                                                                >  5:188973/1‑149 (MQ=255)                                                             aTCGATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAAc                                                                                      <  6:266510/142‑1 (MQ=255)                                                             aTCGATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAAc                                                                                      >  5:266510/1‑142 (MQ=255)                                                                gATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCg                                                                            >  2:269281/1‑149 (MQ=255)                                                                 aTGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGt                                                                           >  3:211628/1‑149 (MQ=255)                                                                 aTGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGt                                                                           <  3:18638/149‑1 (MQ=255)                                                                     gcTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGAc                                                                        >  1:99903/1‑148 (MQ=255)                                                                         gCCAATGCCCAGGGCGTGCTTGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCa                                                                   <  3:56253/149‑1 (MQ=255)                                                                           cAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAgg                                                                 >  6:113157/1‑149 (MQ=255)                                                                           cAATGCCCAGGGCGTGCTGGGCAAGGACACGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCACTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAgg                                                                 >  2:194626/1‑149 (MQ=255)                                                                                cccAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGcc                                                            <  1:269281/149‑1 (MQ=255)                                                                                 ccAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGa                                                                         >  7:215249/1‑135 (MQ=255)                                                                                 ccAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGa                                                                         <  8:215249/135‑1 (MQ=255)                                                                                 ccAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGcc                                                            >  1:18410/1‑148 (MQ=255)                                                                                 ccAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGATACATGGGCAAGCTGCGCTGAACGCAAGCTGCCCTGCACCCCCAACGCAAAGGGAAACCAACAATGAACGCGCCTTTCTCCCCGCAACGCCAGACCCGTCACTACCatttggat                                                            >  7:282436/1‑141 (MQ=255)                                                                                  cAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGa                                                          <  4:211628/149‑1 (MQ=255)                                                                                    gggCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGa                                                          >  4:151603/1‑147 (MQ=255)                                                                                    gggCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGa                                                          <  3:151603/147‑1 (MQ=255)                                                                                    gggCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGATg                                                        <  6:188973/149‑1 (MQ=255)                                                                                                 aaGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGATGCCGCCCACCACAt                                           <  5:113157/149‑1 (MQ=255)                                                                                                     aCCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGATGCCGCCCACCACATTCAt                                       <  2:99903/149‑1 (MQ=255)                                                                                                      cccGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGc                                                                                                                                         >  1:129935/1‑50 (MQ=255)                                                                                                      cccGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGc                                                                                                                                         <  2:129935/50‑1 (MQ=255)                                                                                                       ccGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGATGCCGCCCACCACATTCATGc                                     >  4:7465/1‑149 (MQ=255)                                                                                                         gCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGaa                                                                                                          <  5:202383/78‑1 (MQ=255)                                                                                                         gCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGaa                                                                                                          >  6:202383/1‑78 (MQ=255)                                                                                                         gCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGATGCCGCCCACCACATTCAt                                       <  4:17640/145‑1 (MQ=255)                                                                                                         gCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGATGCCGCCCACCACATTCAt                                       >  3:17640/1‑145 (MQ=255)                                                                                                         gCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGATGCCGCCCACCACATTCATGCCt                                   >  7:67101/1‑149 (MQ=255)                                                                                                              aaaGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGTTGCCGCCCACCACATTCATGCCTTCCTc                              <  1:194626/149‑1 (MQ=255)                                                                                                                 gCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGATGCCGCcca                                                 >  4:145213/1‑127 (MQ=255)                                                                                                                   tACATGGGCAAGCTGCGCTGAACGCCAGCtgcccatgtagctttccagcgggtccttgcccagcacgccctgggcattggccagcgcatcgatgaacagggagaacagttcggactgggtgccgatgtc                                             >  4:114889‑M2/1‑29 (MQ=255)                                                                                                                   tACATGGGCAAGCTGCGCTGAACGCCAGCtgcccatgtagctttccagcgggtccttgcccagcacgccctgggcattggccagcgcatcgatgaacagggagaacagttcggactgggtgccgatgtc                                             <  3:114889‑M2/129‑101 (MQ=255)                                                                                                                    aCATGGGCAAGCTGCGCTGAACGCCAGCtgcccatgtagctttccagcgggtccttgcccagcacgccctgggcattggccagcgcatcgatgaacagggagaacagttcggactgggtgccgatgtcgagcttg                                      >  4:279325‑M2/1‑28 (MQ=255)                                                                                                                    aCATGGGCAAGCTGCGCTGAACGCCAGCtgcccatgtagctttccagcgggtccttgcccagcacgccctgggcattggccagcgcatcgatgaacagggagaacagttcggactgggtgccgatgtcgagcttg                                      <  3:279325‑M2/135‑108 (MQ=255)                                                                                                                       tGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGATGCCGCCCACCACATTCATGCCTTCCTCGACCAGAAg                     <  2:173683/149‑1 (MQ=255)                                                                                                                        gggCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGATGCCGCCCACcaca                                            >  5:313777/1‑125 (MQ=255)                                                                                                                        gggCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGATGCCGCCCACcaca                                            <  6:313777/125‑1 (MQ=255)                                                                                                                          gCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGATGCCGCCCACCACATTCATGCCTTCCTCGACCAGAAGgcg                  <  8:67101/149‑1 (MQ=255)                                                                                                                               cTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGATGCCGCCCACCACATTCATGCCTTCCTCGACCAGAAGGCGCTGaa             >  7:223808/1‑149 (MQ=255)                                                                                                                                  cgcTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGATGCCGCCCACCACATTCATGCCTTCCTCGACCAGAAGGCGCTGAAc            <  1:172321/147‑1 (MQ=255)                                                                                                                                          gCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGATGCCGCCCTCAACAATCATGCCTTCCTCGACCAGAAGGCGCTGAACGCCGAAGGGc  >  1:290087/1‑149 (MQ=255)                                                                                                                                          gCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGATGCCGCCCACCACATTCATGCCTTCCTCGACCAGAAGGCGCt                >  4:285582/1‑135 (MQ=255)                                                                                                                                               |                                                                                                                                                CGCAAGAACGTCTACGCCAAGCTCGACATCGGCACCCAGTCCGAACTGTTCTCCCTGTTCATCGATGCGCTGGCCAATGCCCAGGGCGTGCTGGGCAAGGACCCGCTGGAAAGCTACATGGGCAAGCTGCGCTGAACGCCAGCTGCCCTGCAACCCCACCGCAAAGGAAAACCAACAATGAACGCGCCTTTCGCCCCGCAACGCCAGACCCGTGACTACCAGGCAGCCGATGCCGCCCACCACATTCATGCCTTCCTCGACCAGAAGGCGCTGAACGCCGAAGGGC  >  NC_002947/2955486‑2955771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.