New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3359940 =	54 (1.020)	6 (0.120)	5/248	NT	11.5%	coding (1327/1581 nt)	PP_2956	ribosomal protein S6 modification protein‑like protein
	?	NC_002947	3359972 =	40 (0.780)					coding (1295/1581 nt)	PP_2956	ribosomal protein S6 modification protein‑like protein

CACGGTCGCCGGTCTGCTTCAGGTCCACACCGTACAGCCCTTGCCCGATGAGCCTGGCAGTGTCGACGGCCAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCGGTGTAGCAGTACTCCTGGGCCAGCAGCAGTACCGAGTGTTCGAACAGCTCCT  >  NC_002947/3359826‑3360119                                                                                                                                                   |                                                                                                                                                    ccaggagtactgctacaccgaatacgactggcgtatcggcgtactcaacggtgaggcgctttacgcctgccagtacttcatgtccaagggccactggcaaatctacaaccacaaGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTtg                                                                                                                                                   <  5:32516‑M1/35‑1 (MQ=255) cacGGTCGCCGGTCTGCTTCAGGTCCACACCGTACAGCCCTTGCCCGATGAGCCTGGCAGTGTCGACGGCCAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTtg                                                                                                                                                   >  7:75871/1‑149 (MQ=255) cacGGTCGCCGGTCTGCTTCAGGTCCACACCGTACAGCCCTTGCCCGAAGAGCCTGGCAGTGTCGACGGCCAGCTTTACGACTTCGGGTGGCGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTtg                                                                                                                                                   <  8:27851/149‑1 (MQ=255)  acGGTCGCCGGTCTGCTTCAGGTCCACACCGTACAGCCCTTGCCCGATGAGCCTGGCAGTGTCGACGGCCAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTtgt                                                                                                                                                  >  8:80797/1‑149 (MQ=255)     gagtactgctacaccgaatacgactggcgtatcggcgtactcaacggtgaggcgctttacgcctgccagtacttcatgtccaagggccactggcaaatctacaaccacaaggcacaggccgttgacttcgccggcctgggccTTGTGGt                                                                                                                                               <  6:32516‑M2/7‑1 (MQ=255)      tCGCCGGTCTGCTTCAGGTCCACACCGTACAGCCCTTGCCCGATGAGCCTGGCAGTGTCGACGGCCAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGtt                                                                                                                                              <  2:221135/149‑1 (MQ=255)               tGCTTCAGGTCCACACCGTACAGCCCTTGCCCGATGAGCCTGGCAGTGTCGACGGCCAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGGCTTGTGGTTGTAGATTTg                                                                                                                                     >  7:142206/1‑149 (MQ=255)                 cTTCAGGTCCACACCGTACAGCCCTTGCCCGATGAGCCTGGCAGTGTCGACGGCCAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGAttt                                                                                                                                      <  7:36476/146‑1 (MQ=255)                 cTTCAGGTCCACACCGTACAGCCCTTGCCCGATGAGCCTGGCAGTGTCGACGGCCAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGAttt                                                                                                                                      <  5:63470/146‑1 (MQ=255)                           acacCGTACAGCCCTTGCCCGATGAGCCTGGCAGTGTCGACGGCCATCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTGGCCGGCCTGGGCCTTGTGGTTGt                                                                                                                                            <  4:149449/130‑1 (MQ=255)                           acacCGTACAGCCCTTGCCCGATGAGCCTGGCAGTGTAGACGGCCAGCTATACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGt                                                                                                                                            >  3:149449/1‑130 (MQ=255)                                 tACAGCCCTTGCCCGATGAGCCTGGCAGTGTCGACGGCCAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACAt                                                                                                                   <  8:143376/149‑1 (MQ=255)                                    aGCCCTTGCCCGATGAGCCTGGCAGTGTCGACGGCCAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGaa                                                                                                                >  8:85246/1‑149 (MQ=255)                                     ggccTTGGCGGTTGAGCCTGGCAGTGTCGTCGGCCAGCTTTACGACTTGGGGTGGTGCCTGTTGCAGGGGGACCGCGCGTCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGaa                                                                                                                <  3:222206/146‑1 (MQ=255)                                           gCCCGATGAGCCTGGCAGTGTCGACGGCCAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTg                                                                                                          <  8:217313/148‑1 (MQ=255)                                            cccGATGAGCCTGGCAGTGTCGACGGCCAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTgg                                                                                                         <  7:80797/148‑1 (MQ=255)                                               gATGAGCCTGGCAGTGTCGACGGCCAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTgg                                                                                                                              >  3:254464/1‑124 (MQ=255)                                               gATGAGCCTGGCAGTGTCGACGGCCAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTgg                                                                                                                              <  4:254464/124‑1 (MQ=255)                                               gATGAGCCTGGCAGTGTCGACGGCCAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAgg                                                                                                     >  6:128558/1‑149 (MQ=255)                                                        ggCAGTGTCGACGGCCAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTgg                                                                                                                                                <  8:275055/97‑1 (MQ=255)                                                        ggCAGTGTCGACGGCCAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTgg                                                                                                                                                >  7:275055/1‑97 (MQ=255)                                                         gCAGTGTCGACGGCCAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAgc                                                                                             <  7:85246/147‑1 (MQ=255)                                                           aGTGTCGACGGCCAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGGCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCt                                                                                         <  8:142206/149‑1 (MQ=255)                                                               acgcctgccagtacttcatgtccaagggccactggcaaatctacaaccacaaGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTtg                                                                                                                                                   >  1:38246‑M1/53‑87 (MQ=255)                                                               acgcctgccagtacttcatgtccaagggccactggcaaatctacaaccacaaGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTtg                                                                                                                                                   <  2:38246‑M1/35‑1 (MQ=255)                                                                       cAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCAGCACAGGCCGTTGACTTCACCGGCCTAGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTgg                                                                                                         >  7:52257/1‑121 (MQ=255)                                                                                gACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATAc                                                                    >  1:46161/1‑149 (MQ=255)                                                                                gACATCGGGTGGTGCCTGTTGCACCGTGACCGCGCGGCACAGGCAGTTGACTTCGCCGGCCTGGGCATTGTGGTTGTAGATTTTCAAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGTGTACGCCGATAc                                                                    >  2:189289/1‑149 (MQ=255)                                                                                     caagggccactggcaaatctacaaccacaaGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGt                                                                                                                                               >  7:299077‑M1/31‑69 (MQ=255)                                                                                     caagggccactggcaaatctacaaccacaaGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGt                                                                                                                                               <  8:299077‑M1/39‑1 (MQ=255)                                                                                           gtgCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTAt                                                         >  6:221086/1‑149 (MQ=255)                                                                                            tgCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTAtt                                                        >  5:65618/1‑149 (MQ=255)                                                                                              ccTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCg                                                      >  8:328145/1‑149 (MQ=255)                                                                                                tGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCg                                                      >  4:328062/1‑147 (MQ=255)                                                                                                tGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCg                                                      <  3:328062/147‑1 (MQ=255)                                                                                                 gTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACAGGAAGTACTGGCAGGCGGAAAGCGCCTCAACGATGAGTACGCCGAGACGCGAGTCGTCTTCGgtg                                                   >  2:262731/1‑149 (MQ=255)                                                                                                     cACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCGGTGTAg                                                <  5:221086/148‑1 (MQ=255)                                                                                                     cACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCGGTGTAg                                                >  4:63489/1‑148 (MQ=255)                                                                                                     cACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCGGTGTAGc                                               <  6:65618/149‑1 (MQ=255)                                                                                                      aCCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCGGTGTAg                                                >  5:363733/1‑147 (MQ=255)                                                                                                      aCCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCGGTGTAGCa                                              <  5:128558/149‑1 (MQ=255)                                                                                                            accacaaggcccaggccggcgaagtcaacggcctgtgccTTGTGGTTGTAGATTTGCCAGTGGCCCTTg                                                                                                                        >  7:299077‑M2/40‑69 (MQ=255)                                                                                                            accacaaggcccaggccggcgaagtcaacggcctgtgccTTGTGGTTGTAGATTTGCCAGTGGCCCTTg                                                                                                                        <  8:299077‑M2/30‑1 (MQ=255)                                                                                                            accacaaGGCCCAGGCCGGCGAAGTCAACGGCCTGTGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCGGTGTAGCAGTACTc                                        <  6:32516‑M1/142‑1 (MQ=255)                                                                                                                cgcgGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCGGTGTAGCAGTACTCCTgg                                    <  7:328145/149‑1 (MQ=255)                                                                                                                cgcgGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCGGTGTAGCAGTACTCCTgg                                    <  2:46161/149‑1 (MQ=255)                                                                                                                caaggcccaggccggcgaagtcaacggcctgtgccTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGt                                                                                                  <  2:38246‑M2/52‑1 (MQ=255)                                                                                                                caaggcccaggccggcgaagtcaacggcctgtgccTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGt                                                                                                  >  1:38246‑M2/36‑87 (MQ=255)                                                                                                                caaggcccaggccggcgaagtcaacggcctgtgccTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCGGTGTAGCAGTACTCCTgg                                    <  5:32516‑M2/114‑1 (MQ=255)                                                                                                                      acaGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGc                                                                          >  8:128584/1‑105 (MQ=255)                                                                                                                                 aCTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCGGTGTAGCAGTACTCCTGGGCCAGCAGCAGTAcc                     >  5:130892/1‑147 (MQ=255)                                                                                                                                     cGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCGGTGTAGCAGTACTCCTGGGCCAGCAGCAGTACCGAgt                 <  3:63489/147‑1 (MQ=255)                                                                                                                                      gCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCGGTGTAg                                                >  5:295472/1‑115 (MQ=255)                                                                                                                                      gCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCGGTGTAg                                                <  6:295472/115‑1 (MQ=255)                                                                                                                                       ccGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCGGTGTAGCAGTACTCCTGGGCCAGCAGCAGTACCGAGTGTTc             <  8:75871/149‑1 (MQ=255)                                                                                                                                                 ccTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCGGTGTAGCAGTACTCCTGGGCcagca                             >  5:235003‑M2/3‑123 (MQ=255)                                                                                                                                                 ccTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCGGTGTAGCAGTACTCCTGGGCcagca                             <  6:235003‑M2/121‑1 (MQ=255)                                                                                                                                                  cTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCGGTGTAGCAGTACTCCTGGGCCAGCAGCAGTACCGAGTGTTCGAACAGCTCCt  >  1:183221‑M2/2‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CACGGTCGCCGGTCTGCTTCAGGTCCACACCGTACAGCCCTTGCCCGATGAGCCTGGCAGTGTCGACGGCCAGCTTTACGACTTCGGGTGGTGCCTGTTCCACCGGGACCGCGCGGCACAGGCCGTTGACTTCGCCGGCCTGGGCCTTGTGGTTGTAGATTTGCCAGTGGCCCTTGGACATGAAGTACTGGCAGGCGTAAAGCGCCTCACCGTTGAGTACGCCGATACGCCAGTCGTATTCGGTGTAGCAGTACTCCTGGGCCAGCAGCAGTACCGAGTGTTCGAACAGCTCCT  >  NC_002947/3359826‑3360119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.