New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3608784	50 (0.950)	3 (0.060)	3/244	NT	6.1%	coding (333/2265 nt)	PP_3182	GGDEF domain‑containing protein
	?	NC_002947	= 3608817	45 (0.890)					coding (300/2265 nt)	PP_3182	GGDEF domain‑containing protein

TCGAATTGGTCAACGGCAGCAGGAAGGGCAGGCGCCAAGTGGGCAGGGCAGCGGTTTGGCTGACAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGGCTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGC  >  NC_002947/3608669‑3608960                                                                                                                                                     |                                                                                                                                                 tCGAATTGGTCAACGGCAGCAGGAAGGGCAGGCGCCAAGTGGGCAGGGCAGCGGTTTGGCTGACAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTcg                                                                                                                                                  >  5:197369/1‑149 (MQ=255)    aaTTGCTCAACCCCAGCACGAAGGCCACGCGCCAAGTGGGCAGGGCAGCGGTTTGGCTGACAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGAGCCGCTGCACTTGGAGCAACCAGTCTGCCGGCAACTCGgcg                                                                                                                                               <  8:267548‑M2/149‑4 (MQ=255)        ggTCAACGGCAGCAGGAAGGGCAGGCGCCAAGTGGGCAGGGCAGCGGTTTGGCTGACAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGcc                                                                                                                                            <  8:61864/148‑1 (MQ=255)         gTCAACGGCAGCAGGAAGGGCAGGCGCCAAGTGGGCAGGGCAGCGGTTTGGCTGACAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCt                                                                                                                                           >  1:151061/1‑148 (MQ=255)         gTCAACGGCAGCAGGAAGGGCAGGCGCCAAGAGGGCAGGGCAGCGGTTTGGCTGACAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCt                                                                                                                                           >  4:286514/1‑148 (MQ=255)              cGGCAGCAGGAAGGGCAGGCGCCAAGTGGGCAGGGCAGCGGTTTGGCTGACAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCgg                                                                                                                                     >  7:88306/1‑149 (MQ=255)                  atcagGAAGGGCAGGCGCCAAGTGGGCAGGGCAGCGGTTTGGCTGACAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTAtg                                                                                                                                 <  3:201355/147‑1 (MQ=255)                     agGAAGGGCAGGCGCCAAGTGGGCAGGGCAGCGGTTTGGCTGACAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTAtggct                                                                                                                              >  8:166642/1‑149 (MQ=255)                       gAAGGGCAGGCGCCAAGTGGGCAGGGCAGCGGTTTGGCTGACAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCAt                                                                                                                                        >  1:137726/1‑137 (MQ=255)                             cAGGCGCCAAGCGGGCAGGGCAGCGGTTTGGCTGACAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTa                                                                                                                      <  3:286514/149‑1 (MQ=255)                              aGGCGCCAAGTGGGCAGGGCAGCGGTTTGGCTGACAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTag                                                                                                                     <  2:151061/149‑1 (MQ=255)                              aGGCGCCAAGTGGGCAGGGCAGCGGTTTGGCTGACAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTag                                                                                                                     >  1:57730/1‑149 (MQ=255)                                   ccAAGTGGGCAGGGCAGCGGTTTGGCTGACAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGcc                                                                                                                >  6:297783/1‑149 (MQ=255)                                       gTGGGCAGGGCAGCGGTTTGGCTGACAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGcc                                                                                                            <  6:197369/149‑1 (MQ=255)                                          ggcagggcagCGGTTTGGCTGACAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑g                                                                                                        >  7:81317/1‑149 (MQ=255)                                                gcagCGGTTTGGCTGACAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑gtcggtc                                                                                                  <  2:57730/149‑1 (MQ=255)                                                gcagCGGTGTGGCTGTCAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGTTCAATGTGCCGCTGCAGTTGTCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGTCCTT‑gtcggtc                                                                                                  <  7:267548/149‑1 (MQ=255)                                                             tGACAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAg                                                                                     >  4:321868/1‑149 (MQ=255)                                                                 aGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCt                                                                                 <  5:297783/149‑1 (MQ=255)                                                                   gTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑gtcgg                                                                                                    >  1:180461/1‑128 (MQ=255)                                                                   gTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑gtcgg                                                                                                    <  2:180461/128‑1 (MQ=255)                                                                     ttAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGaa                                                                             >  5:110454/1‑149 (MQ=255)                                                                       aaTGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAaca                                                                           >  3:76869/1‑149 (MQ=255)                                                                          gCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGcc                                                                                                            <  3:3198/114‑1 (MQ=255)                                                                          gCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGcc                                                                                                            >  4:3198/1‑114 (MQ=255)                                                                           cTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAgg                                                                       <  4:76869/149‑1 (MQ=255)                                                                           cTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAgg                                                                       <  8:88306/149‑1 (MQ=255)                                                                           cTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAg                                                                        <  8:81317/148‑1 (MQ=255)                                                                            ttGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAggg                                                                      >  4:39392/1‑149 (MQ=255)                                                                            ttGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAggg                                                                      >  5:10476/1‑149 (MQ=255)                                                                                cAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTctg                                                                  >  3:297404/1‑149 (MQ=255)                                                                                  ggAAAGGTTGGTAACGGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCACCTCGCCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGTACACAGGGTctgct                                                                <  6:348643/149‑1 (MQ=255)                                                                                         tttGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGGc                                                         >  4:272874/1‑149 (MQ=255)                                                                                          ttGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAgg                                                                       >  8:262288/1‑134 (MQ=255)                                                                                          ttGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAgg                                                                       <  7:262288/134‑1 (MQ=255)                                                                                           tGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGGCt                                                        <  3:272874/148‑1 (MQ=255)                                                                                                  gTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGGCTGAGGTTGc                                                <  3:39392/149‑1 (MQ=255)                                                                                                       gATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGGCTGAGGTTGCCTTgg                                           >  1:13803/1‑149 (MQ=255)                                                                                                              gggCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGGCTGAGGTTGCCTTGGCGCcgcg                                    >  2:265671/3‑149 (MQ=255)                                                                                                                   gCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGgcggcacattgatcgctacggtttcaaacctttcctgccaagcattaaacctgtcagccaaaccgctgccctgcccacttggcgcctgcccttcctgctgccgttgaccaattc                                <  5:222286‑M2/149‑115 (MQ=255)                                                                                                                   gCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGTCAGGCTGAgg                                                    <  3:333003/128‑1 (MQ=255)                                                                                                                   gCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGTCAGGCTGAgg                                                    >  4:333003/1‑128 (MQ=255)                                                                                                                    cTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGgcggcacattgatcgctacggtttcaaacctttcctgccaagcattaaacctgtcagccaaaccgctgccctgcccacttggcgcctgcccttcctgctgccgt                                          <  5:300339‑M2/138‑105 (MQ=255)                                                                                                                    cTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGgcggcacattgatcgctacggtttcaaacctttcctgccaagcattaaacctgtcagccaaaccgctgccctgcccacttggcgcctgcccttcctgctgccgt                                          >  6:300339‑M2/1‑34 (MQ=255)                                                                                                                       cAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGGCTGAGGTTGCCTTGGCGCCGCGCTTTCAt                             <  6:10476/147‑1 (MQ=255)                                                                                                                       cAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGGCTGAGGTTGCCTTGGCGCCGCGCTTTCAt                             <  1:178859/147‑1 (MQ=255)                                                                                                                               gcAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGGCTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTgg                   <  2:13803/149‑1 (MQ=255)                                                                                                                                   ccAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGGCTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTca               >  1:185884/1‑149 (MQ=255)                                                                                                                                    cAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGGCTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTcac              <  4:297404/149‑1 (MQ=255)                                                                                                                                            cGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTTGGGCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGGCTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGAcc        >  1:87335/1‑148 (MQ=255)                                                                                                                                            cGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGGCTGAGGTTGCCTTGGCGCCGCGCTTTCAt                             <  1:114271/126‑1 (MQ=255)                                                                                                                                            cGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGGCTGAGGTTGCCTTGGCGCCGCGCTTTCAt                             >  2:114271/1‑126 (MQ=255)                                                                                                                                            cGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGGCTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCa      >  2:161912/1‑149 (MQ=255)                                                                                                                                                aaCTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGGCTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGc  >  1:34730/1‑149 (MQ=255)                                                                                                                                                  cTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGGCTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGt                 <  6:295803/132‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                 TCGAATTGGTCAACGGCAGCAGGAAGGGCAGGCGCCAAGTGGGCAGGGCAGCGGTTTGGCTGACAGGTTTAATGCTTGGCAGGAAAGGTTTGAAACCGTAGCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTT‑GTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGGCTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGC  >  NC_002947/3608669‑3608960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.