New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3709474 =	66 (1.250)	4 (0.080)	4/238	NT	7.3%	coding (923/1077 nt)	paaE	ring 1,2‑phenylacetyl‑CoA epoxidase reductase subunit
	?	NC_002947	3709526 =	40 (0.810)					coding (871/1077 nt)	paaE	ring 1,2‑phenylacetyl‑CoA epoxidase reductase subunit

CACATACCCGGCCGCCACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGTGATATGGCTAAGCGCCGAATCCACCTGGCGTGCCGCCTCACGGGCTTCGCGGCGGGCCTCGCTGCCGGCGGCGGCGAACA  >  NC_002947/3709380‑3709669                                                                                                                                                    |                                                                                                                                                cacaTACCCGGCCGCCACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCa                                                                                                                                               <  5:229776/149‑1 (MQ=255)    ccaggtggattcggcgcttagccatatcaccgtgatcagcgacggccgggcactgagcttcgacctgccgcgcaacacccagaacgtgctggACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGc                                                                                                                                             >  2:62797‑M1/93‑149 (MQ=255)     tACCCGGCCGCCACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCCCTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCAc                                                                                                                                           <  4:188577/149‑1 (MQ=255)          ggCCGCCACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCt                                                                                                                                      <  2:14122/149‑1 (MQ=255)           gccgccACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTg                                                                                                                                     <  3:141339/149‑1 (MQ=255)            ccgccACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTgg                                                                                                                                    <  5:320198/149‑1 (MQ=255)              gccACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGgt                                                                                                                                  <  4:287240/149‑1 (MQ=255)                 gcgcttagccatatcaccgtgatcagcgacggccgggcactgagcttcgacctgccgcgcaacacccagaacgtgctggACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCa                                                                                                                                               >  3:83687‑M1/80‑134 (MQ=255)                 gcgcttagccatatcaccgtgatcagcgacggccgggcactgagcttcgacctgccgcgcaacacccagaacgtgctggACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCa                                                                                                                                               <  4:83687‑M1/55‑1 (MQ=255)                 aCTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGtt                                                                                                                               >  2:126560/1‑149 (MQ=255)                         gTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCa                                                                                                                       <  1:126560/149‑1 (MQ=255)                            ttCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGt                                                                                                                    >  6:294088/1‑149 (MQ=255)                                  ggCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTgcgc                                                                                                                           >  6:106998/1‑136 (MQ=255)                                  ggCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTgcgc                                                                                                                           <  5:106998/136‑1 (MQ=255)                                     aTGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCt                                                                                                             >  8:36613/1‑147 (MQ=255)                                                 cATCTGCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGt                                                                                                                    >  7:320297/1‑128 (MQ=255)                                                 cATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGt                                                                                                                    <  8:320297/128‑1 (MQ=255)                                                  aTCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTc                                                                                              >  2:303739/1‑149 (MQ=255)                                                   tctcCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCg                                                                                             >  8:277059/1‑149 (MQ=255)                                                     tcCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCt                                                                                           >  8:81392/1‑149 (MQ=255)                                                     tcCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGAGTCCAGCACGTTCTGGGTGTTGCGCGGCAggg                                                                                                                    >  3:185608/1‑123 (MQ=255)                                                      ccACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGaa                                                                                                                <  6:150163/127‑1 (MQ=255)                                                      ccACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGaa                                                                                                                >  5:150163/1‑127 (MQ=255)                                                      ccACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGt                                                                                                         <  3:29201/134‑1 (MQ=255)                                                      ccACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGt                                                                                                         >  4:29201/1‑134 (MQ=255)                                                       cACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCt                                                                                           <  4:319734/147‑1 (MQ=255)                                                       cACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTg                                                                                          >  4:83954/1‑148 (MQ=255)                                                          ttCGCCCTCGATCACTCGGCACTTGCAGGTGGATGCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGAt                                                                                        >  1:46652/1‑148 (MQ=255)                                                          ttCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGaa                                                                                                                >  6:145532/1‑123 (MQ=255)                                                             gCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACgg                                                                                   <  7:81392/149‑1 (MQ=255)                                                              cccTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGt                                                                                  <  7:36613/149‑1 (MQ=255)                                                               ccTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGaa                                                                                                                >  4:30459/1‑118 (MQ=255)                                                               ccTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGaa                                                                                                                <  3:30459/118‑1 (MQ=255)                                                                         tCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACg                                                                                    >  1:235289/1‑136 (MQ=255)                                                                         tCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACg                                                                                    <  2:235289/136‑1 (MQ=255)                                                                         tCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGTGATATGGCt                                                                         >  4:27935/1‑147 (MQ=255)                                                                         tCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGTGATATGGCt                                                                         >  3:208558/1‑147 (MQ=255)                                                                              aCTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGTGATATGGCTAAGCGcc                                                                  <  3:83954/149‑1 (MQ=255)                                                                              aCTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGTGATATGGCTAAGCGcc                                                                  <  5:294088/149‑1 (MQ=255)                                                                                ttGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGTGATATGGCTAAGCGCCg                                                                 >  1:327507/1‑148 (MQ=255)                                                                                           gctggacgccggcaatgccatcggcgccgagctgccctactcgtgcaaggccggcgtCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGTGATATGGCTAAGCGCCGAATCCACCTgg                                                      >  2:62797‑M2/58‑149 (MQ=255)                                                                                             tggacgccggcaatgccatcggcgccgagctgccctactcgtgcaaggccggcgtCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGTGATATGGCTAAgcgc                                                                   >  3:83687‑M2/56‑134 (MQ=255)                                                                                             tggacgccggcaatgccatcggcgccgagctgccctactcgtgcaaggccggcgtCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGTGATATGGCTAAgcgc                                                                   <  4:83687‑M2/79‑1 (MQ=255)                                                                                              acacGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGTGATATGGCTAAGCGCCGAATCCACCTGGCGt                                                   <  4:299137/149‑1 (MQ=255)                                                                                                  gccggcaatgccatcggcgccgagctgccctactcgtgcaaggccggcgtCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGTGATATGGCTAAGCGCCGAATCCACCTGGCGTgccg                                               >  8:289188‑M2/51‑149 (MQ=255)                                                                                                  GCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTgg                                                                                                                                    >  7:270017‑M1/1‑64 (MQ=255)                                                                                                  GCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTgg                                                                                                                                    <  8:270017‑M1/64‑1 (MQ=255)                                                                                                   CCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGa                                                                                         >  2:256559‑M1/1‑106 (MQ=255)                                                                                                       CCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGTGATATGGCTAAGCGCCGAATCCAc                                                          <  3:151975‑M1/133‑1 (MQ=255)                                                                                                       CCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGTGATATGGCTAAGCGCCGAATCCAc                                                          >  4:151975‑M1/1‑133 (MQ=255)                                                                                                        cTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGTGATATGGCTAAGCGCCGAATCCACCTGGCGTGCCGCCTCAc                                         <  7:277059/149‑1 (MQ=255)                                                                                                                            cGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGTGATATGGCTAAGCGCCGAATCCACCTGGCGTGCCGCCTCACGGGCTTCGCGGCGGGCCTCg                     <  1:303739/149‑1 (MQ=255)                                                                                                                             ggCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGTGATATGGCTAAGCGCCGAATCCACCTGGCGTGCCGCCTCACGGGCTTCGCGGCGGGCCTc                      <  2:46652/147‑1 (MQ=255)                                                                                                                                              cggcgtCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGTGATATGGCTAAGCGCCGAATCCACCTGGCGTGCCGCCTCACGGGCTTCGCGGCGGGCCTCGCTGCCGGCGGCGGCGaa    >  4:277731‑M2/7‑148 (MQ=255)                                                                                                                                               ggcgtCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGTGATATGGCTAAGCGCCGAATCCACCTGGCGTGCCGCCTCACGGGCTTCGCGGCGGGCCTCGCTGCCGGCGGCGGCGAACa  <  3:27935‑M2/144‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                CACATACCCGGCCGCCACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGA‑GCACACGCCGGCCTTGCACGAGTAGGGCAGCTCGGCGCCGATGGCATTGCCGGCGTCCAGCACGTTCTGGGTGTTGCGCGGCAGGTCGAAGCTCAGTGCCCGGCCGTCGCTGATCACGGTGATATGGCTAAGCGCCGAATCCACCTGGCGTGCCGCCTCACGGGCTTCGCGGCGGGCCTCGCTGCCGGCGGCGGCGAACA  >  NC_002947/3709380‑3709669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.