New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3732276 =	50 (0.950)	4 (0.080)	4/238	NT	8.2%	coding (965/1464 nt)	PP_3299	lipoprotein
	?	NC_002947	3732335 =	43 (0.870)					coding (906/1464 nt)	PP_3299	lipoprotein

GTTGGCATCGCCCGTGAAAAATGTTCCGCCAGAGGTAGACGCACTGCCGATCAGCCCGCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGGCGCGGTGGGTACCTGGCGTACTGCCAAGCATGACATCCAAGGCGTTGAGAGCC  >  NC_002947/3732191‑3732476                                                                                                                                                 |                                                                                                                                              gttggCATCGCCCGTGAAAAATGTTCCGCCAGAGGTAGACGCACTGCCGATCAGCCCGCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCgg                                                                                                                                           >  5:237544/1‑149 (MQ=255) gttggCATCGCCCGTGAAAAATGTTCCGCCAGAGGTAGACGCACTGCCGATCAGCCCGCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCgg                                                                                                                                           <  2:140378/149‑1 (MQ=255)      cATCGCCCGTGAAAAATGTTCCGCCAGAGGTAGACGCACTGCCGATCAGCCCGCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGa                                                                                                                                      <  6:237544/149‑1 (MQ=255)            ccGTGAAAAATGGTCCGCCAGAGGTAGACGCACTGCCGATCAGCCCGCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGAcggcg                                                                                                                                 >  7:105915/1‑148 (MQ=255)             cGTGAAAAATGTTCCGCCAGAGGTAGACGCACTGCCGATCAGCCCGCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGa                                                                                                                               <  2:264553/149‑1 (MQ=255)              gTGAAAAATGTTCCGCCAGAGGTAGACGCACTGCCGATCAGCCCGCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAg                                                                                                                              >  8:201865/1‑149 (MQ=255)              gTGAAAAATGTTCCGCCAGAGGTAGACGCACTGCCGATCAGCCCGCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAg                                                                                                                              <  2:144913/149‑1 (MQ=255)                   aaaTGTTCCGCCAGAGGTAGACGCACTGCCGATCAGCCCGCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGAt                                                                                                                         <  7:201865/149‑1 (MQ=255)                        ttCCGCCAGAGGTAGACGCACTGCCGATCAGCCCTCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGa                                                                                                                     <  6:23355/148‑1 (MQ=255)                           cGCCAGAGGTAGACGCACTGCCGATCAGCCCGCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGt                                                                                                                 <  7:31380/149‑1 (MQ=255)                             ccAGAGGTAGACGCACTGCCGATCAGACCGCCTATCGAGAATTTTGGGTAATACTCTCTGATCGGACTGCCGATCATGGCATTGGCAGCCATGAGCGTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGTAGCAGATCGGAAGGttt                                                                                                               <  7:40716/149‑1 (MQ=255)                              cAGAGGTAGACGCACTTCCGATCAGCCCGCATATCGAGAATTTTGTGTATTAGTCACTGATCGCAGTGCCGATCATGGCATTGGCAGACATGAGCCTGCGCTCAGCGGCGATCAGGTCGGTCCGACGGCGGAGTTGATc                                                                                                                        <  8:234261/139‑1 (MQ=255)                              cAGAGGTAGACGCACTGCCGATCAGCCCGCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATc                                                                                                                        >  7:234261/1‑139 (MQ=255)                                         gCACTGCCGATCAGCCCGCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTgcg                                                                                                    >  3:87861/1‑148 (MQ=255)                                             tGCCGATCAGCCCGCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAAc                                                                                               >  5:314957/1‑149 (MQ=255)                                               ccGATCAGCCCGCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTgcg                                                                                                    >  7:91678/1‑142 (MQ=255)                                               ccGATCAGCCCGCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTgcg                                                                                                    <  8:91678/142‑1 (MQ=255)                                                 gATCAGCCCGCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAg                                                                                           <  8:105915/149‑1 (MQ=255)                                                         cGCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGa                                                                                   <  8:325030/149‑1 (MQ=255)                                                          gCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAg                                                                                  >  3:45624/1‑149 (MQ=255)                                                             tATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAg                                                                                  <  2:214639/146‑1 (MQ=255)                                                             tATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAg                                                                                  >  1:214639/1‑146 (MQ=255)                                                              aTCGACAATTATTGGTAATACTCACTGATCGCACTGCCGATCATGCCATTCACAGCCATCAGCCAGCGCTCAGCGCCGATCAAGAAGGGCAGACGGCGCAGCAGATCTCAAGGTTTGCCGATTTGCTCAAACGCACCCACCTGAGGGAt                                                                              >  8:67677/1‑149 (MQ=255)                                                               tCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTTAGCGGCGATCAGGTCGGGCCGACGGCGGa                                                                                                                               >  7:286708/1‑99 (MQ=255)                                                               tCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTTAGCGGCGATCAGGTCGGGCCGACGGCGGa                                                                                                                               <  8:286708/99‑1 (MQ=255)                                                               tCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGAtt                                                                             <  4:87861/149‑1 (MQ=255)                                                                 gagaATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGa                                                                           >  8:58682/1‑149 (MQ=255)                                                                      ttttGGGTATTACTCACTGATCGCACTGCCGTTCATGGCTTTGGCAGCCATGAGCCTGCGCTGAGCGGCTATCTGGTCGGGCCGAGGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAgg                                                                      <  4:133791/149‑1 (MQ=255)                                                                            gTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGa                                                                        <  5:293148/141‑1 (MQ=255)                                                                            gTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGa                                                                        >  6:293148/1‑141 (MQ=255)                                                                            gTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTg                                                                <  4:45624/149‑1 (MQ=255)                                                                                 aCTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATc                                                           >  7:308808/1‑149 (MQ=255)                                                                                      ctgatcgccgctgagcgcaggctcatggctgccaatgccatgatcggcagtgcgatcagGTCGGGCCGACGGCGGAGCGGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGgc                                                      >  4:203415‑M2/60‑149 (MQ=255)                                                                                      ctgagcgcaggctcatggctgccaatgccatgatcggcagtgcgatcagcggcgatcagGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGgc                                                      >  7:123173‑M2/60‑149 (MQ=255)                                                                                       tgatcgccgctgagcgcaggctcatggctgccaatgccatgatcggcagtgcgatcagGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGgcg                                                     >  6:73956‑M2/59‑149 (MQ=255)                                                                                        GATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGgcgc                                                    <  4:19127‑M1/149‑1 (MQ=255)                                                                                            GCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGAt                                                                              <  2:115343‑M1/119‑1 (MQ=255)                                                                                            GCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGAt                                                                              >  1:115343‑M1/1‑119 (MQ=255)                                                                                            GCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGa                                                                        >  4:143767‑M1/1‑125 (MQ=255)                                                                                            GCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGa                                                                        <  3:143767‑M1/125‑1 (MQ=255)                                                                                            GCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGGCGCGGt                                                 >  3:19127‑M1/1‑148 (MQ=255)                                                                                                 tgagcgcaggctcatggctgccaatgccatgatcggcagtgcgatcagGTCGGGCCGACGGCGGAGCGGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGGCGCGGTGGGTAc                                           <  3:203415‑M2/101‑1 (MQ=255)                                                                                                  ccGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGc                                                                     >  1:14072/1‑122 (MQ=255)                                                                                                  ccGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGc                                                                     <  2:14072/122‑1 (MQ=255)                                                                                                    gATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGGCGCGGTGGGTACCTg                                        <  8:308808/149‑1 (MQ=255)                                                                                                    gATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGGCGCGGTGGGTACCTg                                        >  3:210590/1‑149 (MQ=255)                                                                                                     aTCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGGCGCGGTGGGTACCTgg                                       <  6:314957/149‑1 (MQ=255)                                                                                                         tGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGGCGCGGTGGGTACCTg                                        <  7:127086/144‑1 (MQ=255)                                                                                                         tGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGGCGCGGTGGGTACCTg                                        >  8:127086/1‑144 (MQ=255)                                                                                                                     ccATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGGCGCGGTGGGTACCTGGCGTACTGCCAAGCATg                       <  7:58682/149‑1 (MQ=255)                                                                                                                       aTGAGCCTGCGCTCAGCGTCGATCATGTGGGGGCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCTTGTGGGCGCGGTGGGTACCTGTCGTACTGCCAAGCATTAc                     <  4:210590/149‑1 (MQ=255)                                                                                                                       aTGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGGCGCGGTGGGTACCTgg                                       <  6:71840/131‑1 (MQ=255)                                                                                                                       aTGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGGCGCGGTGGGTACCTgg                                       >  5:71840/1‑131 (MQ=255)                                                                                                                             gtGCGATCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGGCGCGGTGGGTACCTGGCGTACTGCCAAGCATGACATCCaa               <  8:123173/148‑1 (MQ=255)                                                                                                                             cTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGGCGCGGTGGGTACCTGGCGTACTGCCAAGCATGACATCCaa               <  3:256725/149‑1 (MQ=255)                                                                                                                                     aGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGGCGCGGTGGGTACCTGGCGTACTGCCAAGCATGACATCCAAGGCGtt         >  3:345060/1‑147 (MQ=255)                                                                                                                                          cgatcagGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGGCGCGGTGGGTACCTGGCGTACTGCCAAGCATGACATCCAAGGCGTTGAGAGcc  <  4:345060‑M2/142‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                              GTTGGCATCGCCCGTGAAAAATGTTCCGCCAGAGGTAGACGCACTGCCGATCAGCCCGCCTATCGAGAATTTTGGGTAATACTCACTGATCGCACTGCCGATCATGGCATTGGCAGCCATGAGCCTGCGCTCAGCGGCGATCAGGTCGGGCCGACGGCGGAGCAGATCGGAAGGTTTGCCGATTTGCGCAAACGCAGGCACCTGAGGGATTGACGAGGCAATTGCCATCTGGGCGCGGTGGGTACCTGGCGTACTGCCAAGCATGACATCCAAGGCGTTGAGAGCC  >  NC_002947/3732191‑3732476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.