New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4116891	45 (0.850)	4 (0.080)	3/242	NT	8.4%	coding (36/456 nt)	iorA‑II	isoquinoline 1‑oxidoreductase subunit alpha
	?	NC_002947	= 4116933	44 (0.870)					coding (78/456 nt)	iorA‑II	isoquinoline 1‑oxidoreductase subunit alpha

ACCGGGGGACAACGTATTCCCCATGCAGATAAAACACAGCGACAACAACCGTGACGGGCAGGTGAAACCATGGAACTACGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTGCGCGCCTGCGTTACCCCGGTGGCCGGTGTGGTGGGGCGTGAGGTCACCACCATCGAGGCGATC  >  NC_002947/4116787‑4117080                                                                                                                                                   |                                                                                                                                                    aCCGGGGGACAACGTATTCCCCATGCAGATAAAACACAGCGACAACAACCGTGACGGGCAGGTGAAACCATGGAACTACGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATga                                                                                                                                                   <  8:186878‑M2/149‑3 (MQ=255)       ggACAACGTATTCCCCATGCAGATAAAACACAGCGACAACAACCGTGACGGGCAGGTGAAACCATGGAACTACGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTggg                                                                                                                                             <  7:189294/149‑1 (MQ=255)                 ttCCCCATGCAGATAAAACACAGCGACAACAACCGTGACGGGCAGGTGAAACCATGGAACTACGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCAGCGATGACCTGGGGCTGACCgg                                                                                                                                    <  7:26828/148‑1 (MQ=255)                   ccccATGCAGATAAAACACAGCGACAACAACCGTGACGGGCAGGTGAAACCATGGAACTACGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCAc                                                                                                                                 >  2:214485/1‑149 (MQ=255)                           aGATAAAACACAGCGACAACAACCGTGACGGGCAGGTGAAACCATGGAACTACGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATg                                                                                                                         >  8:85495/1‑149 (MQ=255)                            gATAAAACACAGCGACAACAACCGTGACGGGCAGGTGAAACCATGGAACTACGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATgg                                                                                                                        <  7:186878/149‑1 (MQ=255)                             aTAAAACACAGCGACAACAACCGTGACGGGCAGGTGAAACCATGGAACTACGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGc                                                                                                                       >  5:275127/1‑149 (MQ=255)                              tAAAACACAGCGACAACAACCGTGACGGGCAGGTGAAACCATGGAACTACGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGAc                                                                                                                                       >  1:156463/1‑132 (MQ=255)                              tAAAACACAGCGACAACAACCGTGACGGGCAGGTGAAACCATGGAACTACGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGAc                                                                                                                                       <  2:156463/132‑1 (MQ=255)                                 aaCACAGCGACAACAACCGTGACGGGCAGGTGAAACCATGGAACTACGCATCAACCAGAAGACCTATCAGCTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCg                                                                                                                   >  4:68008/1‑149 (MQ=255)                                  acacAGCGACAACAACCGTGACGGGCAGGTGAAACCATGGAACTACGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCgg                                                                                                                  >  7:201007/1‑149 (MQ=255)                                      aGCGACAACAACCGTGACGGGCAGGTGAAACCATGGAACTACGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTg                                                                                                              <  7:85495/149‑1 (MQ=255)                                               aacCGTGACGGGCAGGTGAAACCATGGAACTACGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTgc                                                                                                     >  2:233969/1‑149 (MQ=255)                                               aacCGTGACGGGCAGGTGAAACCATGGAACTACGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTgc                                                                                                     >  8:272379/1‑149 (MQ=255)                                                      aCGGGCAGGTGAAACCATGGAACTACGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCt                                                                                              <  7:272379/149‑1 (MQ=255)                                                        gggCAGGTGAAACCATGGAACTACGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGt                                                                                            >  4:153756/1‑149 (MQ=255)                                                                 aaaCCATGGAACTACGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCtg                                                                                   >  4:121655/1‑149 (MQ=255)                                                                   aCCATGGAACTACGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCtggt                                                                                 <  8:201007/149‑1 (MQ=255)                                                                               cGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAAt                                                                       <  3:153756/147‑1 (MQ=255)                                                                                gCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAAtgtg                                                                    <  1:233969/149‑1 (MQ=255)                                                                                 cATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATgtgg                                                                   >  2:20355/1‑149 (MQ=255)                                                                                  aTCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTg                                                                                                              >  1:319665/1‑105 (MQ=255)                                                                                  aTCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTg                                                                                                              <  2:319665/105‑1 (MQ=255)                                                                                  aTCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGc                                                                          <  5:86626/141‑1 (MQ=255)                                                                                  aTCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGc                                                                          >  6:86626/1‑141 (MQ=255)                                                                                  aTCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGCCGCCTCTTCGGAGCTGGTGGACGGCAATgtggt                                                                  >  6:199733/1‑149 (MQ=255)                                                                                   tCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATgtggtg                                                                 <  6:275127/149‑1 (MQ=255)                                                                                    cAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATgacctg                                                                                                                                               >  3:58028‑M2/1‑64 (MQ=255)                                                                                    cAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATgacctg                                                                                                                                               <  4:58028‑M2/70‑7 (MQ=255)                                                                                                cTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATgacctgataggtcttctggttgatgcgtagttccatggtttcacctgcccgtcacggttgttgtcgctgtgttttatctgcatggggaatacgttgt                                                    <  3:81928‑M2/149‑98 (MQ=255)                                                                                                cTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATgacctgataggtcttctggttgatgcgtagttccatggtttcacctgcccgtcacggttgttgtcgctgtgttttatctgcatggggaatac                                                         >  5:151941‑M2/1‑52 (MQ=255)                                                                                                cTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATgacctgataggtcttctggttgatgcgtagttccatggtttcacctgcccgtcacggttgttgtcgctgtgttttatctgcatggggaatac                                                         <  6:151941‑M2/144‑93 (MQ=255)                                                                                                   tCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTGCGCGCCTGCGTTAccc                                                 <  1:214485/149‑1 (MQ=255)                                                                                                       gTCGTGGCGGACGCCGTCACGCCCCTGCTGTGGGTACTCCGCGATGACCTGGGGCTGTCGGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGGGCTGGTGGACGGCAATGTGGTGCGCGCCTGCGTTACCCCGGt                                             <  5:199733/149‑1 (MQ=39)                                                                                                       gTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTGCGCGCCTGCGTTACCCCGGt                                             <  3:121655/149‑1 (MQ=255)                                                                                                       gTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTGCGCGCCTGCGTTACCCCGGt                                             >  5:83672/1‑149 (MQ=255)                                                                                                            ggCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTgg                                                                                                                                              <  7:13478/47‑1 (MQ=255)                                                                                                            ggCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTgg                                                                                                                                              >  8:13478/1‑47 (MQ=255)                                                                                                                gACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATgacctgataggtcttctggttgatgcgtagttccatggtttcacctgcccgtcacggttgttgtcgctgtgttttatctgcatggggaatacgttgtcccccggtgcagaaac                                    >  4:81928‑M2/1‑36 (MQ=255)                                                                                                                   gCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATgtgg                                                                   >  4:201991/1‑115 (MQ=255)                                                                                                                   gCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATgtgg                                                                   <  3:201991/115‑1 (MQ=255)                                                                                                                           gCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTGCGCGCCTGCGTTACCCCGGTGGCCGgtg                                     >  5:113597/1‑137 (MQ=255)                                                                                                                           gCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTGCGCGCCTGCGTTACCCCGGTGGCCGgtg                                     <  6:113597/137‑1 (MQ=255)                                                                                                                           gCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTGCGCGCCTGCGTTACCCCGGTGGCCGGTgtggtg                                <  7:74089/142‑1 (MQ=255)                                                                                                                           gCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTGCGCGCCTGCGTTACCCCGGTGGCCGGTgtggtg                                >  8:74089/1‑142 (MQ=255)                                                                                                                            ccccTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTGCGCGCCTGCGTTACCCCGGTGGCCGGTGTGGTGGGGCGTGa                        <  3:68008/149‑1 (MQ=255)                                                                                                                             cccTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTGCGCGCCTGCGTTACCCCGGTGGCCGGTGTGGTGGGGCGTGAg                       <  6:83672/149‑1 (MQ=255)                                                                                                                                 gctgTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTgc                                                                >  2:96918/1‑104 (MQ=255)                                                                                                                                 gctgTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTgc                                                                <  1:96918/104‑1 (MQ=255)                                                                                                                                    gtgGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTGCGCGCCTGCGTTACCCCGGTGGCCGGTGTGGTGGGGCGTGAGGTcacca                >  3:61577/1‑149 (MQ=255)                                                                                                                                       ggTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTGCGCGCCTGCGTTACCCCGGTGGCCGGTGTGGTGGGGCGTGAGGTCAccacca             >  8:270255/1‑149 (MQ=255)                                                                                                                                         tAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTGCGCGCCTGCGTTACCCCGGTGGCCGGTGTGGTGGGGCGTGAGGTCACCACCATc           >  4:173390/1‑149 (MQ=255)                                                                                                                                           aTCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTGCGCGCCTGCGTTACCCCGGTGGCCGGTGTGGTGGGGCGTGAGGTCACCACCATCGa         <  1:20355/149‑1 (MQ=255)                                                                                                                                            tCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTGCGCGCCTGCGTTACCCCGGTGGCCGGTGTGGTGGGGCGTGAGGTCACCACCATCGAg        >  4:275423/1‑149 (MQ=255)                                                                                                                                               gcgATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACg                                                                            <  2:346329/78‑1 (MQ=255)                                                                                                                                               gcgATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACg                                                                            >  1:346329/1‑78 (MQ=255)                                                                                                                                               gcgATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTGCGCGCCTGCGTTACCCCGGTGGCCGGTGTGGTGGGGCGTGAGGTCACCACCATCGAGGc      >  8:217538/1‑148 (MQ=255)                                                                                                                                                  aTGCCCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTGCGCGCCTGCGTTACCCCGGTGGCCGGTGTGGTGGGGCGTGAGGTCACCACCATCGAGGCGATc  <  7:217538/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    ACCGGGGGACAACGTATTCCCCATGCAGATAAAACACAGCGACAACAACCGTGACGGGCAGGTGAAACCATGGAACTACGCATCAACCAGAAGACCTATCAGGTCGAGGCGGACGCCGACACGCCCCTGCTGTGGGTAATCCGCGATGACCTGGGGCTGACCGGCACCAAGTATGGCTGCGGCTTGGCCCAGTGCGGCGCCTGTTCGGTGCTGGTGGACGGCAATGTGGTGCGCGCCTGCGTTACCCCGGTGGCCGGTGTGGTGGGGCGTGAGGTCACCACCATCGAGGCGATC  >  NC_002947/4116787‑4117080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.