New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4352948	44 (0.830)	6 (0.120)	6/240	NT	12.3%	coding (74/1086 nt)	yrpB	2‑nitropropane dioxygenase
	?	NC_002947	= 4352964	44 (0.880)					coding (90/1086 nt)	yrpB	2‑nitropropane dioxygenase

CTGTAAGACTCGCCGCAAGCCCCCGCCGCAGCGCTCGCCCCACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGCTGAACCTGAACTTCTT  >  NC_002947/4352818‑4353101                                                                                                                                                   |                                                                                                                                          cTGTAAGACTCGCCGCAAGCCCCCGCCGCAGCGCTCGCCCCACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGgc                                                                                                                                         >  8:190702‑M2/1‑147 (MQ=255)      aGACTCGCCGCAAGCCCCCGCCGCAGCGCTCGCCCCACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGgccatg                                                                                                                                     >  6:42149‑M2/1‑142 (MQ=255)          tCGCCGCAAGCCCCCGCCGCAGCGCTCGCCCCACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCggccatggccat                                                                                                                                >  6:297394/1‑149 (MQ=255)                 aaGCCCCCGCCGCAGCGCTCGCCCCACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCCACCTGCTGGGGATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCACGGCCATGGCGATCgaggtg                                                                                                                         >  4:258372/1‑144 (MQ=255)                  aGCCCCCGCCGCAGCGCTCGCCCCACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTgg                                                                                                                        <  5:305561/149‑1 (MQ=255)                      cccGCCGCAGCGCTCGCCCCACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGc                                                                                                                      >  4:251484/1‑147 (MQ=255)                      cccGCCGCAGCGCTCGCCCCACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCCGAGCCGGTCGCCCCCgccatgggtgcctgcagaatggg                                                                                                                    >  7:114380‑M2/1‑126 (MQ=255)                           cgcAGCGCTCGCCCCACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCcaggcag                                                                                                               <  5:297394/149‑1 (MQ=255)                              aGCGCTCGCCCCACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGtg                                                                                                            <  3:258372/149‑1 (MQ=255)                                       cccACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGgcg                                                                                                   >  3:330051/1‑149 (MQ=255)                                        ccACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGgcgc                                                                                                  >  4:263024/1‑149 (MQ=255)                                                   gaATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTgcg                                                                                       <  4:330051/149‑1 (MQ=255)                                                             aGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAg                                                                             <  3:263024/149‑1 (MQ=255)                                                                cATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAgcgg                                                                          <  5:253820/149‑1 (MQ=255)                                                                cATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAgcgg                                                                          <  3:251484/149‑1 (MQ=255)                                                                              ccgTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTgcgcg                                                            >  1:309902/1‑149 (MQ=255)                                                                                 tATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTgcgc                                                                                      <  7:298497/120‑1 (MQ=255)                                                                                 tATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTgcgc                                                                                      >  8:298497/1‑120 (MQ=255)                                                                                     cTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGcc                                                          >  3:64725/1‑144 (MQ=255)                                                                                     cTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGcc                                                          >  4:94004/1‑144 (MQ=255)                                                                                     cTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGcc                                                          >  6:50512/1‑144 (MQ=255)                                                                                      tCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGaa                                                                      <  8:175980/131‑1 (MQ=255)                                                                                      tCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGaa                                                                      >  7:175980/1‑131 (MQ=255)                                                                                        aaCCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGc                                                  >  4:235142/1‑149 (MQ=255)                                                                                        aaCCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGc                                                  >  4:94517/1‑149 (MQ=255)                                                                                         aCCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCt                                                 >  3:93328/1‑149 (MQ=255)                                                                                         aCCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCt                                                 >  8:105882/1‑149 (MQ=255)                                                                                               tgGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAgcggc                                                                         <  4:110499/119‑1 (MQ=255)                                                                                               tgGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAgcggc                                                                         >  3:110499/1‑119 (MQ=255)                                                                                                       gAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCg                                    <  4:93328/148‑1 (MQ=255)                                                                                                            gCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGcc                              >  1:19978/1‑149 (MQ=255)                                                                                                             cccATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGcc                              >  5:93487/1‑148 (MQ=255)                                                                                                             cccATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGcc                              <  6:93487/148‑1 (MQ=255)                                                                                                               cATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCgg                           >  8:258383/1‑149 (MQ=255)                                                                                                               cATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCgg                           <  7:258383/149‑1 (MQ=255)                                                                                                                     gCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGcc                     >  1:41486/1‑149 (MQ=255)                                                                                                                       aGGCACCCATGGCGGGGGCGACCGGCTCGgccatgggtgcctgcagaatgggcagctcgatgcccagcaggttgaggatacggcggtcgggccaatggctcatgcgattctccttgcgtggggcgagcgctgcggcgggggctt                        <  8:29923‑M2/144‑116 (MQ=255)                                                                                                                       aGGCACCCATGGCGGGGGCGACCGGCTCGgccatgggtgcctgcagaatgggcagctcgatgcccagcaggttgaggatacggcggtcgggccaatggctcatgcgattctccttgcgtggggcgagcgctgcggcgggggctt                        >  7:29923‑M2/1‑29 (MQ=255)                                                                                                                        ggCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGc                  >  8:82736/1‑149 (MQ=255)                                                                                                                        ggCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGc                  <  2:19978/149‑1 (MQ=255)                                                                                                                           aCCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCgcgc                                      >  7:146298/1‑126 (MQ=255)                                                                                                                           aCCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCgcgc                                      <  8:146298/126‑1 (MQ=255)                                                                                                                            cccATGGCGGGGGCGACCGGCTCGgccatgggtgcctgcagaatgggcagctcgatgcccagcaggttgaggatacggcggtcgggccaatggctcatgcgattctccttgcgtggggcgagcgctgcggcgggggcttgcggcgagtc              >  8:114380‑M2/1‑24 (MQ=255)                                                                                                                             ccATGGCGGGGGCGACCGGCTCGgccatgggtgcctgcagaatgggcagctcgatgcccagcaggttgaggatacggcggtcgggccaatggctcatgcgattctc                                                        <  8:224617‑M2/106‑84 (MQ=255)                                                                                                                             ccATGGCGGGGGCGACCGGCTCGgccatgggtgcctgcagaatgcgcagctcgatgcccagcaggttgaggatacggcggtcgggccaatggctcatgcgattctc                                                        >  7:224617‑M2/1‑23 (MQ=255)                                                                                                                             ccATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGgc                        >  7:300984/1‑138 (MQ=255)                                                                                                                             ccATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGgc                        <  8:300984/138‑1 (MQ=255)                                                                                                                             ccATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGctgaac             >  2:32214/1‑149 (MQ=255)                                                                                                                              cATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCa                                              <  4:59651/115‑1 (MQ=255)                                                                                                                              cATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCa                                              >  3:59651/1‑115 (MQ=255)                                                                                                                               aTGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGctgaacct           >  1:245318/1‑149 (MQ=255)                                                                                                                                  gCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGctgaacctgaa        <  2:245318/149‑1 (MQ=255)                                                                                                                                        gCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGCTGAACCTGAActtctt  <  3:94517/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                          CTGTAAGACTCGCCGCAAGCCCCCGCCGCAGCGCTCGCCCCACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGCTGAACCTGAACTTCTT  >  NC_002947/4352818‑4353101

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.