New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5178038	37 (0.700)	3 (0.060)	3/236	NT	7.2%	coding (450/486 nt)	PP_4554	hypothetical protein
	?	NC_002947	= 5178060	43 (0.880)					coding (428/486 nt)	PP_4554	hypothetical protein

GATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAGGCCTTGTCCGACGGTACCCAACCGGG  >  NC_002947/5177922‑5178205                                                                                                                                           |                                                                                                                                                  gATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGaa                                                                                                                                         <  4:266905/149‑1 (MQ=255)             cAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCcctg                                                                                                                                               >  6:253794‑M2/1‑127 (MQ=255)             cAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCcctg                                                                                                                                               <  5:253794‑M2/131‑5 (MQ=255)                     gccgcGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATttc                                                                                                                                <  4:100822/138‑1 (MQ=255)                     gccgcGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATttc                                                                                                                                >  3:100822/1‑138 (MQ=255)                         cgACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCa                                                                                                                 <  2:73736/149‑1 (MQ=255)                             tCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCg                                                                                                             >  5:318828/1‑149 (MQ=255)                                      tACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTc                                                                                                    <  1:17675/149‑1 (MQ=255)                                               ccgactgatggccgcactggcccaggtgcgtgccgaagtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCTCAGCCCtggtgg                                                                                                                                           >  4:294853‑M2/42‑101 (MQ=255)                                               ccgactgatggccgcactggcccaggtgcgtgccgaagtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCTCAGCCCtggtgg                                                                                                                                           <  3:294853‑M2/60‑1 (MQ=255)                                               ccgactgatggccgcactggcccaggtgcgtgccgaagtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAg                                                                                           >  5:80423‑M2/42‑149 (MQ=255)                                                    TTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCCCCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACg                                                                                      <  2:43245‑M1/149‑1 (MQ=255)                                                        gcacgcacCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCg                                                                                  <  6:318828/149‑1 (MQ=255)                                                          actcacCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGAGGTCCAGGCTTTCTCCCCAGCCCTGGTGGACGCCCAGTTCTTCATGGGCCCGGCAGGCGGTGGCAGTCCAGAGCCAGGCACGGGCGgt                                                                                >  6:14461/4‑149 (MQ=255)                                                          acgcacCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGgt                                                                                <  6:42451/149‑1 (MQ=255)                                                              acCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAg                                                                            >  3:192469/1‑149 (MQ=255)                                                                cTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCg                                                                          >  4:204146/1‑149 (MQ=255)                                                                cTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCAAGGAACGTGCGGTGTAGCg                                                                          >  6:260085/1‑149 (MQ=255)                                                                   ggCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCCGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCgg                                                                         <  7:177550/147‑1 (MQ=255)                                                                    gCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGtt                                                                      >  1:94614/1‑149 (MQ=255)                                                                     ccAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGc                                                                                         <  6:160973/129‑1 (MQ=255)                                                                      cAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCg                                                                                  >  8:105548/1‑135 (MQ=255)                                                                      cAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCg                                                                                  <  7:105548/135‑1 (MQ=255)                                                                         tgcgtgccgaagtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGcc                                                                 <  6:80423‑M2/134‑1 (MQ=255)                                                                              ccATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGtt                                                            <  3:204146/149‑1 (MQ=255)                                                                                    gtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGAGGTGTAGCGGGTTTTGCCCTGTTCCTCGt                                                      >  5:86807‑M2/5‑149 (MQ=255)                                                                                       gGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCa                                                    >  7:153604‑M2/2‑148 (MQ=255)                                                                                        ggCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTg                                                                                               <  7:132683/104‑1 (MQ=255)                                                                                        ggCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTg                                                                                               >  8:132683/1‑104 (MQ=255)                                                                                        ggCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCa                                                    >  1:325121/1‑147 (MQ=255)                                                                                          cATCCGCTGGGTCACCACATCCACCAGGCGGTCCTGGCTTTCTCCCCCGCCCTGGTGTAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGc                                                <  8:153604/149‑1 (MQ=255)                                                                                           aTCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCAc                                                                                       >  8:303984/1‑109 (MQ=255)                                                                                           aTCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCAc                                                                                       <  7:303984/109‑1 (MQ=255)                                                                                              cGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGAt                                            <  4:163275/149‑1 (MQ=255)                                                                                                cTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCa                                          <  4:192469/149‑1 (MQ=255)                                                                                                   ggTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCAcag                                       <  2:325121/149‑3 (MQ=255)                                                                                                     tCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCACATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGc                                                >  6:44674/1‑138 (MQ=255)                                                                                                          accTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTg                                                              <  2:179401/119‑1 (MQ=255)                                                                                                          accTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCAATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTg                                                              >  1:179401/1‑119 (MQ=255)                                                                                                             tCCACCAGGCGGTCCAGGCTTTCTCCCCAGCcctggtggaggtggtgacccagcggatgcccgactgatggccgcactggcccaggtgcgtgccgaagtcgaggctgtgtaccggcaggagtcgcggcgcatactggcgacactgatcc                             <  4:343809‑M2/149‑119 (MQ=255)                                                                                                             tCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATg                               >  6:110032/1‑147 (MQ=255)                                                                                                              ccaccaGGCGGTCCAGGCTTTCTCCCCAGCcctggtggaggtggtgacccagcggatgcccgactgatggccgcactggcccaggtgcgtgccgaagtcgaggctgtgtaccggcagga                                                          >  3:236553‑M2/1‑30 (MQ=255)                                                                                                              ccaccaGGCGGTCCAGGCTTTCTCCCCAGCcctggtggaggtggtgacccagcggatgcccgactgatggccgcactggcccaggtgcgtgccgaagtcgaggctgtgtaccggcagga                                                          <  4:236553‑M2/119‑90 (MQ=255)                                                                                                               caccaGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTTGCATTAAAGTGCCAGCCACGGGCGGTGTAGCGGGTTTTGCACTGTTCCTCGTCAAAGCTTAAAACGGCGGTCATCAAg                            >  4:252338/1‑148 (MQ=255)                                                                                                                 ccaGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAGGcc                         <  1:43245/149‑1 (MQ=255)                                                                                                                        gTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGt                                                             >  4:108963/1‑106 (MQ=255)                                                                                                                        gTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGt                                                             <  3:108963/106‑1 (MQ=255)                                                                                                                        gTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAGGCCTTGTcc                   >  2:319756/1‑148 (MQ=255)                                                                                                                         tCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAGGCCTTGTCCGa                 <  6:86807/149‑1 (MQ=255)                                                                                                                                tttCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAGGCCTTGTCCGACGGTAcc          >  3:327373/1‑149 (MQ=255)                                                                                                                                 ttCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTc                                  <  2:264014/124‑1 (MQ=255)                                                                                                                                 ttCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTc                                  >  1:264014/1‑124 (MQ=255)                                                                                                                                    tcCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAGGCCTTGTCCGACGGTACCCAAc      <  2:94614/149‑1 (MQ=255)                                                                                                                                      cccAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAg                            <  1:115314/125‑1 (MQ=255)                                                                                                                                      cccAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAg                            >  2:115314/1‑125 (MQ=255)                                                                                                                                      cccAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAGGCCTTGTCCGACGGTACCCAACCg    >  8:39193/1‑149 (MQ=255)                                                                                                                                        catcccTGGTGGAAGCCCATTTCTGCCTGGGCCCGGCAGGCGGGGGCATTCCCGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAGGCCTTGTCCGACGGTACCCAACCggg  <  5:14461/146‑1 (MQ=255)                                                                                                                                        cAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAGGCCTTGTCCGACGGTACCCAACCggg  <  7:39193/149‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                  GATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAAAGCTGATCACGGCGGTCATGAAGGCCTTGTCCGACGGTACCCAACCGGG  >  NC_002947/5177922‑5178205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.