New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5211690	44 (0.830)	3 (0.060)	3/238	NT	6.3%	coding (260/1638 nt)	PP_4592	metal dependent hydrolase
	?	NC_002947	= 5211711	48 (0.970)					coding (239/1638 nt)	PP_4592	metal dependent hydrolase

GCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAGGAACCACCGCTTGCAGG  >  NC_002947/5211565‑5211857                                                                                                                                                    |                                                                                                                                                   gCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACt                                                                                                                                                   <  4:157941‑M2/148‑2 (MQ=255)       ccAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACtcatgaa                                                                                                                                             <  5:72803‑M2/148‑8 (MQ=255)          gcagcagGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAACGCCACGCCCGCGCCACTCATGaacaa                                                                                                                                          <  1:3066/149‑1 (MQ=255)            agcagGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAacac                                                                                                                                       <  4:125599/149‑1 (MQ=255)                  atatACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAg                                                                                                                                 <  7:200895/149‑1 (MQ=255)                     taCGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCAACGCCCGCGCCACTCATGAACAACACGATAAGTAc                                                                                                                              >  6:218153/1‑149 (MQ=255)                         cgGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACtc                                                                                                                                                  <  2:8063‑M2/125‑3 (MQ=255)                           gCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCt                                                                                                                         >  6:220892/1‑148 (MQ=255)                              aaCTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCAc                                                                                                                     <  6:72803/149‑1 (MQ=255)                               aattgaACGACATCAAGTCGCGAACCTACGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGGCCGCGCCACtcatg                                                                                                                                               <  5:304146‑M2/120‑6 (MQ=255)                                          aTCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCgg                                                                                                           >  3:143718/1‑147 (MQ=255)                                          aTCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCgg                                                                                                           >  3:204241/1‑147 (MQ=255)                                           tCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAg                                                                                                        >  8:165697/1‑149 (MQ=255)                                           tCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAg                                                                                                        >  7:267310/1‑149 (MQ=255)                                             aaGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAgg                                                                                                       >  3:20881/1‑148 (MQ=255)                                                      aCCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTGACGt                                                                                             >  4:78916/1‑149 (MQ=255)                                                      aCCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAAc                                                                                               <  5:220892/147‑1 (MQ=255)                                                        cTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGt                                                                                             >  5:238220/1‑147 (MQ=255)                                                        cTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGa                                                                                           <  4:143718/149‑1 (MQ=255)                                                        cTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGa                                                                                           <  4:204241/149‑1 (MQ=255)                                                            gCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAgg                                                                                         <  5:262525/147‑1 (MQ=255)                                                            gCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAgg                                                                                         >  6:262525/1‑147 (MQ=255)                                                                     gTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGaa                                                                              >  5:261234/1‑149 (MQ=255)                                                                      tctcGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAAc                                                                             <  4:20881/149‑1 (MQ=255)                                                                          ggCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAAcgc                                                                           <  3:157941/147‑1 (MQ=255)                                                                             cATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAaga                                                                      <  8:267310/149‑1 (MQ=255)                                                                               tatTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCaa                                                                                                    >  5:130665/1‑117 (MQ=255)                                                                               tatTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCaa                                                                                                    <  6:130665/117‑1 (MQ=255)                                                                               tatTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGa                                                                                   <  7:105853/134‑1 (MQ=255)                                                                               tatTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGa                                                                                   >  8:105853/1‑134 (MQ=255)                                                                                 ttACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCAt                                                                  <  6:238220/149‑1 (MQ=255)                                                                                         cATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATcagc                                                              <  4:192087/145‑1 (MQ=255)                                                                                         cATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATcagc                                                              >  3:192087/1‑145 (MQ=255)                                                                                            gCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCa                                                                                                     <  4:234708/103‑1 (MQ=255)                                                                                            gCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCa                                                                                                     >  3:234708/1‑103 (MQ=255)                                                                                             ccGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGa                                                                               <  7:97712/124‑1 (MQ=255)                                                                                             ccGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGa                                                                               >  8:97712/1‑124 (MQ=255)                                                                                                   tCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGc                                                   >  7:333512/1‑146 (MQ=255)                                                                                                     aaTAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGAc                                              >  1:22545/1‑149 (MQ=255)                                                                                                     aaTAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGAc                                              <  8:333512/149‑1 (MQ=255)                                                                                                          gTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTGACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGc                                         <  3:78916/149‑1 (MQ=255)                                                                                                             cGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACTATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAACATCAGCACAGCAAACGCCAGACTCAGCcac                                      <  7:20180/149‑1 (MQ=255)                                                                                                                  tACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACtcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcggaggtgcgcgacttgatgtcgttcaagtttgccgcgtatatcctgct                                 <  6:108113‑M2/149‑116 (MQ=255)                                                                                                                     tGGTTCATGAAGTAA‑GCCACGCCCGCGCCACtcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcggaggtgcgcgacttgatgtcgttcaagtttgccgcgtatatcctg                                   >  5:296757‑M2/1‑31 (MQ=255)                                                                                                                     tGGTTCATGAAGTAA‑GCCACGCCCGCGCCACtcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcggaggtgcgcgacttgatgtcgttcaagtttgccgcgtatatcctg                                   <  6:296757‑M2/144‑114 (MQ=255)                                                                                                                       gTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATc                                                                 >  7:210275/1‑112 (MQ=255)                                                                                                                       gTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATc                                                                 <  8:210275/112‑1 (MQ=255)                                                                                                                       gTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTCAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGa                              >  5:212279/1‑147 (MQ=255)                                                                                                                        ttCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAg                           <  7:165697/149‑1 (MQ=255)                                                                                                                              aaGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAAcc                                  >  5:29220/1‑136 (MQ=255)                                                                                                                                  aa‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGc                         <  8:10061/141‑1 (MQ=255)                                                                                                                                  aa‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGc                         >  7:10061/1‑141 (MQ=255)                                                                                                                                     gCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAGGAac               <  2:22545/149‑1 (MQ=255)                                                                                                                                      ccACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAGGAacc              >  2:9130/1‑149 (MQ=255)                                                                                                                                        aCGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAGGAaccac            <  5:218153/149‑1 (MQ=255)                                                                                                                                        aCGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAGGAaccac            >  5:39283/1‑149 (MQ=255)                                                                                                                                            ccGCGGCACTGATGAACAACACGATATGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCAt                                                                  <  2:91350/91‑1 (MQ=255)                                                                                                                                                  cACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAGGCACCCCCGCTAGCAgg  >  4:256482/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAA‑GCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAGGAACCACCGCTTGCAGG  >  NC_002947/5211565‑5211857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.